View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21093_low_7 (Length: 408)
Name: NF21093_low_7
Description: NF21093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21093_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 6e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 21 - 206
Target Start/End: Complemental strand, 26887036 - 26886852
Alignment:
| Q |
21 |
accaccttctctacttcatattcattttctaagttactcactttcttccattactattattgtttaccctttcttcttcatttagcttatgattttattt |
120 |
Q |
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| T |
26887036 |
accaccttctctacttcatattcattt-ctaagttactcactttcttccattattattattgtttaccctttcttcttcatttagcttatgattttattt |
26886938 |
T |
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| Q |
121 |
atactagcagaatacccgtgtatatgcacaagtgagcgcattgtgctctttttcttgtgaaagaaagttgcaactctgtataaatt |
206 |
Q |
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| T |
26886937 |
ataccagcagaatacccgtgtatacgcacaagtgagcgcattgtgctctttttcttgtgaaagaaagttgcaattgtgtataaatt |
26886852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 316 - 374
Target Start/End: Complemental strand, 26886740 - 26886682
Alignment:
| Q |
316 |
aatatataaacaggttcccgtattgatatattaaaaatatagacacatccatatattac |
374 |
Q |
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| T |
26886740 |
aatatataaacaggttcccgtattgatatattaaaaatatagacacatccatatattac |
26886682 |
T |
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