View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21093_low_9 (Length: 349)

Name: NF21093_low_9
Description: NF21093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21093_low_9
NF21093_low_9
[»] chr4 (16 HSPs)
chr4 (9-332)||(5106164-5106501)
chr4 (53-190)||(5102079-5102216)
chr4 (194-293)||(5101931-5102030)
chr4 (57-198)||(2477502-2477643)
chr4 (53-179)||(2519163-2519289)
chr4 (127-198)||(2467534-2467605)
chr4 (68-163)||(2621180-2621275)
chr4 (81-170)||(2486265-2486354)
chr4 (68-191)||(2491073-2491196)
chr4 (116-170)||(2525750-2525804)
chr4 (57-151)||(2376264-2376359)
chr4 (226-280)||(2467684-2467738)
chr4 (116-166)||(2536578-2536628)
chr4 (116-166)||(5035615-5035665)
chr4 (130-184)||(12120995-12121049)
chr4 (226-270)||(12126968-12127012)
[»] chr7 (2 HSPs)
chr7 (61-163)||(2576415-2576517)
chr7 (198-281)||(2576250-2576333)
[»] chr1 (1 HSPs)
chr1 (68-169)||(15837976-15838077)


Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 9 - 332
Target Start/End: Complemental strand, 5106501 - 5106164
Alignment:
Q  9 agcagagatttggtcgagaagctcgttgaggtctccggaggagagagtgatgt--------------gacgtaagggaaccttttgaagaggcgatgaat 94  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||    
T  5106501 agcagagatttggtacagaagctcgttgaggtctccggaggagagagtgatgttgagtgagtgatgtgacgtaagggaaccttttgaagaggcgatgaat 5106402  T
Q  95 gaaagggatggtttgatctgtgattgtgacctagaatcgacgacggttggtgatggacaaaaactgttttgagacggcagagagagacttgaaactgtta 194  Q
    |||||||||||||||||  |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5106401 gaaagggatggtttgattagtgattgtgaccgagaatcgaggacggttggtgatggacaaaaactgttttgagacggcagagagagacttgaaactgtta 5106302  T
Q  195 cggatatcgtatatgttcttaaagtcgttggtgaggaatttgaagatgccctcccataactcatccagtaaatatgaacctgttgcatcggctgccattc 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5106301 cggatatcgtatatgttcttaaagtcgttggtgaggaatttgaagatgccctcccataactcatccggtaaatatgaacctgttgcatcggctgccattc 5106202  T
Q  295 tttttctttgggatattgcggcaaccattgttaatcgt 332  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5106201 tttttctttgggatattgcggcaaccattgttaatcgt 5106164  T

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Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 53 - 190
Target Start/End: Complemental strand, 5102216 - 5102079
Alignment:
Q  53 gagtgatgtgacgtaagggaaccttttgaagaggcgatgaatgaaagggatggtttgatctgtgattgtgacctagaatcgacgacggttggtgatggac 152  Q
    |||||||||||||| ||||||||||| ||| ||| || ||||||||||||||||| |||| |||||||||||| |||||||| |||  || ||||| |||    
T  5102216 gagtgatgtgacgttagggaacctttcgaaaaggagaggaatgaaagggatggttcgatcagtgattgtgaccgagaatcgaagactattagtgatagac 5102117  T
Q  153 aaaaactgttttgagacggcagagagagacttgaaact 190  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  5102116 aaaaactgtttcgagacgccagagagagacttgaaact 5102079  T

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Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 194 - 293
Target Start/End: Complemental strand, 5102030 - 5101931
Alignment:
Q  194 acggatatcgtatatgttcttaaagtcgttggtgaggaatttgaagatgccctcccataactcatccagtaaatatgaacctgttgcatcggctgccatt 293  Q
    |||||||||||| ||||||||||  |||| | |||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||    
T  5102030 acggatatcgtagatgttcttaacttcgtcgttgaggaatttgaagatgcgctcccataactcatccggtaaatatgaacctgttgcagcggctgccatt 5101931  T

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Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 57 - 198
Target Start/End: Original strand, 2477502 - 2477643
Alignment:
Q  57 gatgtgacgtaagggaaccttttgaagaggcgatgaatgaaagggatggtttgatctgtgattgtgacctagaatcgacgacggttggtgatggacaaaa 156  Q
    |||||||||| |||||||||||  |||||  |||||| | |||||||||||||||| |  ||||| ||  |||||||| ||| |||||| ||||||| ||    
T  2477502 gatgtgacgttagggaacctttgaaagagaggatgaagggaagggatggtttgatcggaaattgtcacagagaatcgaagactgttggttatggacagaa 2477601  T
Q  157 actgttttgagacggcagagagagacttgaaactgttacgga 198  Q
    ||| |||||||||  | |||||||||||||||||||||||||    
T  2477602 actcttttgagacaaccgagagagacttgaaactgttacgga 2477643  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 53 - 179
Target Start/End: Original strand, 2519163 - 2519289
Alignment:
Q  53 gagtgatgtgacgtaagggaaccttttgaagaggcgatgaatgaaagggatggtttgatctgtgattgtgacctagaatcgacgacggttggtgatggac 152  Q
    ||||||||| ||||  |||||||| |  ||||| ||||||| ||||||||| |||||||||| |||||||||  || |||||  ||||||||||||||||    
T  2519163 gagtgatgtaacgttggggaacctatcaaagagacgatgaaggaaagggattgtttgatctgagattgtgactgaggatcgaaaacggttggtgatggac 2519262  T
Q  153 aaaaactgttttgagacggcagagaga 179  Q
    | |||||||||||| ||  ||||||||    
T  2519263 agaaactgttttgaaacaacagagaga 2519289  T

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Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 2467534 - 2467605
Alignment:
Q  127 agaatcgacgacggttggtgatggacaaaaactgttttgagacggcagagagagacttgaaactgttacgga 198  Q
    |||||||| ||| |||||| |||||||||||||||||||||||| | ||||||||||||||||||| |||||    
T  2467534 agaatcgaagactgttggtaatggacaaaaactgttttgagacgacggagagagacttgaaactgtcacgga 2467605  T

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Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 68 - 163
Target Start/End: Complemental strand, 2621275 - 2621180
Alignment:
Q  68 agggaaccttttgaagaggcgatgaatgaaagggatggtttgatctgtgattgtgacctagaatcgacgacggttggtgatggacaaaaactgttt 163  Q
    ||||||||| | |||||||||| |||||||||||||||||| ||| | ||||||||   |||| ||  ||||||||||||||||||||||||||||    
T  2621275 agggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgttt 2621180  T

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Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 81 - 170
Target Start/End: Original strand, 2486265 - 2486354
Alignment:
Q  81 aagaggcgatgaatgaaagggatggtttgatctgtgattgtgacctagaatcgacgacggttggtgatggacaaaaactgttttgagacg 170  Q
    ||||| ||||||| ||||||||| ||||  || | |||||||||| |||||||  |||||||||||||||||| ||||||||||||||||    
T  2486265 aagagacgatgaaggaaagggattgttttctcggagattgtgaccgagaatcggagacggttggtgatggacagaaactgttttgagacg 2486354  T

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Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 68 - 191
Target Start/End: Original strand, 2491073 - 2491196
Alignment:
Q  68 agggaaccttttgaagaggcgatgaatgaaagggatggtttgatctgtgattgtgacctagaatcgacgacggttggtgatggacaaaaactgttttgag 167  Q
    |||||||||||  ||||| |||| || ||||||||| |||  ||| | |||||||||| | |||||  ||||||| |||||||||| |||||||||||||    
T  2491073 agggaacctttcaaagagacgattaaggaaagggattgttgcatcggagattgtgaccgaaaatcggagacggtttgtgatggacagaaactgttttgag 2491172  T
Q  168 acggcagagagagacttgaaactg 191  Q
    |||   ||||||||| ||||||||    
T  2491173 acgagtgagagagacctgaaactg 2491196  T

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Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 2525750 - 2525804
Alignment:
Q  116 gattgtgacctagaatcgacgacggttggtgatggacaaaaactgttttgagacg 170  Q
    |||||||||| |||||||| ||| |||||||||||||| ||||||||||||||||    
T  2525750 gattgtgaccaagaatcgaagactgttggtgatggacagaaactgttttgagacg 2525804  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 57 - 151
Target Start/End: Complemental strand, 2376359 - 2376264
Alignment:
Q  57 gatgtgacgtaagggaaccttttgaagaggcgatgaatgaaagggatggtttgatctgtga-ttgtgacctagaatcgacgacggttggtgatgga 151  Q
    ||||||| || ||||||||||  ||| |||||  |||||||| | | |||||||||||||| |||||||| |||||||   |||||||||||||||    
T  2376359 gatgtgatgttagggaaccttcggaataggcggggaatgaaaagaacggtttgatctgtgatttgtgaccgagaatcggaaacggttggtgatgga 2376264  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 280
Target Start/End: Original strand, 2467684 - 2467738
Alignment:
Q  226 tgaggaatttgaagatgccctcccataactcatccagtaaatatgaacctgttgc 280  Q
    |||||||||||||||||| |||||||||||| |   |||||||||||| ||||||    
T  2467684 tgaggaatttgaagatgcgctcccataactcctttggtaaatatgaacatgttgc 2467738  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 2536578 - 2536628
Alignment:
Q  116 gattgtgacctagaatcgacgacggttggtgatggacaaaaactgttttga 166  Q
    |||| ||||| |||||||| || ||||||||||||||| ||||||||||||    
T  2536578 gattttgaccaagaatcgaagaaggttggtgatggacagaaactgttttga 2536628  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 5035615 - 5035665
Alignment:
Q  116 gattgtgacctagaatcgacgacggttggtgatggacaaaaactgttttga 166  Q
    |||| ||||| |||||||| |||||||||||||||| | ||||||||||||    
T  5035615 gattttgaccaagaatcgaagacggttggtgatggagagaaactgttttga 5035665  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 184
Target Start/End: Complemental strand, 12121049 - 12120995
Alignment:
Q  130 atcgacgacggttggtgatggacaaaaactgttttgagacggcagagagagactt 184  Q
    ||||| |||||||||||||||| |  ||||| |||||||||||||||| ||||||    
T  12121049 atcgaagacggttggtgatggagaggaactgctttgagacggcagagaaagactt 12120995  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 270
Target Start/End: Original strand, 12126968 - 12127012
Alignment:
Q  226 tgaggaatttgaagatgccctcccataactcatccagtaaatatg 270  Q
    |||||||||||||||||  |||||||||||||||  |||||||||    
T  12126968 tgaggaatttgaagatgatctcccataactcatcaggtaaatatg 12127012  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 163
Target Start/End: Complemental strand, 2576517 - 2576415
Alignment:
Q  61 tgacgtaagggaaccttttgaagaggcgatgaatgaaagggatggtttgatctgtgattgtgacctagaatcgacgacggttggtgatggacaaaaactg 160  Q
    |||||| ||||| ||||| ||||||||||  ||||||||||||||||  ||| |||||||||||| |||||||| |||| ||||||||||| ||||||||    
T  2576517 tgacgttagggatcctttcgaagaggcgacaaatgaaagggatggttcaatcggtgattgtgaccgagaatcgaagacgattggtgatggataaaaactg 2576418  T
Q  161 ttt 163  Q
    |||    
T  2576417 ttt 2576415  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 281
Target Start/End: Complemental strand, 2576333 - 2576250
Alignment:
Q  198 atatcgtatatgttcttaaagtcgttggtgaggaatttgaagatgccctcccataactcatccagtaaatatgaacctgttgca 281  Q
    ||||| || |||||||||| | ||| | |||||||| ||||||||  | ||||||||||||| |||||||||||| ||||||||    
T  2576333 atatcatagatgttcttaacggcgtcgttgaggaatatgaagatgtgcccccataactcatctagtaaatatgaaactgttgca 2576250  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 68 - 169
Target Start/End: Complemental strand, 15838077 - 15837976
Alignment:
Q  68 agggaaccttttgaagaggcgatgaatgaaagggatggtttgatctgtgattgtgacctagaatcgacgacggttggtgatggacaaaaactgttttgag 167  Q
    ||||||||||| |||||||  | ||||||||||||| ||||||||| ||||| |||   |||||||  |||||||||||||||| | ||||||||| |||    
T  15838077 agggaacctttggaagaggttaggaatgaaagggattgtttgatctatgattttgagggagaatcggagacggttggtgatggagagaaactgtttggag 15837978  T
Q  168 ac 169  Q
    ||    
T  15837977 ac 15837976  T

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