View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21094_low_2 (Length: 465)

Name: NF21094_low_2
Description: NF21094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21094_low_2
NF21094_low_2
[»] chr3 (4 HSPs)
chr3 (1-444)||(35320947-35321372)
chr3 (39-419)||(43215066-43215442)
chr3 (9-181)||(34633426-34633598)
chr3 (127-181)||(43328910-43328964)
[»] chr6 (7 HSPs)
chr6 (1-444)||(7416993-7417431)
chr6 (9-444)||(7424128-7424558)
chr6 (263-444)||(7413302-7413484)
chr6 (1-181)||(6323108-6323288)
chr6 (320-377)||(3061123-3061180)
chr6 (323-413)||(6322882-6322972)
chr6 (100-179)||(3060910-3060990)
[»] chr5 (3 HSPs)
chr5 (1-412)||(31027338-31027742)
chr5 (83-181)||(14024735-14024833)
chr5 (83-181)||(32386288-32386386)
[»] chr4 (7 HSPs)
chr4 (1-419)||(33687744-33688155)
chr4 (252-444)||(34103866-34104059)
chr4 (249-419)||(55952171-55952342)
chr4 (83-181)||(1369234-1369332)
chr4 (83-181)||(28945577-28945675)
chr4 (83-181)||(36859017-36859115)
chr4 (136-181)||(44307377-44307422)
[»] chr7 (6 HSPs)
chr7 (181-397)||(6092133-6092335)
chr7 (9-419)||(3999380-3999782)
chr7 (83-181)||(46045707-46045805)
chr7 (83-181)||(8035511-8035609)
chr7 (83-181)||(45033887-45033985)
chr7 (83-180)||(38110884-38110981)
[»] chr2 (5 HSPs)
chr2 (10-405)||(3871167-3871556)
chr2 (83-181)||(42865717-42865815)
chr2 (83-181)||(11995944-11996042)
chr2 (83-180)||(24126625-24126722)
chr2 (322-408)||(35008364-35008450)
[»] chr1 (7 HSPs)
chr1 (11-181)||(46011442-46011612)
chr1 (54-181)||(36836950-36837077)
chr1 (83-181)||(6293816-6293914)
chr1 (320-413)||(36836733-36836826)
chr1 (124-181)||(16854790-16854847)
chr1 (337-389)||(46011237-46011289)
chr1 (82-170)||(28705790-28705878)
[»] chr8 (5 HSPs)
chr8 (9-181)||(27365659-27365830)
chr8 (83-181)||(45093241-45093339)
chr8 (124-181)||(33373039-33373096)
chr8 (136-181)||(14343115-14343160)
chr8 (124-181)||(42000118-42000175)


Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 35321372 - 35320947
Alignment:
Q  1 aaaccccgtgaaggttggattaaacccaatagtgacggtgcttgcaaaggaaatggagaatattcaagttgtggtggcctctttcgcgactctgaaggga 100  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  35321372 aaactccgtgaaggttggattaaactcaatagtgacggtgcttgcaaaggaaatggagaatattcaagttgtggtgacctctttcgcgactctgaaggga 35321273  T
Q  101 gatggctacaaggctacatttaaaagattggagtttgtgatgcacttcatgctgaaatgtgggg-catgtatcttggtttgggtttggagatggcttggt 199  Q
    |||||||| ||||||||||||||||||||||||||||||||              ||||||||| |||||||||||||||||      ||||||||||      
T  35321272 gatggctaaaaggctacatttaaaagattggagtttgtgat--------------aatgtgggggcatgtatcttggtttgg------agatggcttgac 35321193  T
Q  200 gaaagcacattccgcaactcattgttaaaagtgattctaaaatcttgaatgacatggttacggaaaactgcaagtttagtggctcagttcccatattggt 299  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  35321192 gaaagcacattccgcaactcattgttgaaagtgattctaaaatcttgaatgacatggttacggaaaactgcaagtttagtggctcaggttccatattggt 35321093  T
Q  300 gcaacgcaatcgaaaactcctggctttggattggcaagtccaatttcgtcatacttggagggagggtaatcgatgtgctgattggttggctaattttaac 399  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  35321092 gcaacgcaatcgaaaactcttggctttggattggcgagtccaatttcgccatacttggagggagggtaatcgatgtgctgattggttggctaactttaac 35320993  T
Q  400 ctttctctagactcatttaactg-atcataacggagaatcagtcca 444  Q
    |||||||||||||| ||||| || |||||||||||||||| |||||    
T  35320992 ctttctctagactcttttaattgtatcataacggagaatccgtcca 35320947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 39 - 419
Target Start/End: Original strand, 43215066 - 43215442
Alignment:
Q  39 tgcttgcaaaggaaatggagaatattcaagttgtggtggcctctttcgcgactctgaagggagatggctacaagg-ctacatttaaaa-gattggagttt 136  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||| |||| || ||||||||||| |||| ||||||| |||| |||||||||||    
T  43215066 tgcttgcaaaggaagtggagaatattcaggttgtggtggcctctttcgcggctctaaaaggagatggctaaaagggctacattcaaaaagattggagttt 43215165  T
Q  137 gtgatgcacttcatgctgaaatgtggggcatgtatcttggtttgggtttggagatggcttggtgaaagcacattccgcaactcattgttaaaagtgattc 236  Q
    |||||||||||||||||||||||||||||||||||||| ||||      |||||||| ||||  | ||| |||||  |||||||||||| ||||||||||    
T  43215166 gtgatgcacttcatgctgaaatgtggggcatgtatcttagttt------ggagatggtttggcaagagcgcattctacaactcattgttgaaagtgattc 43215259  T
Q  237 taaaatcttgaatgacatggttacggaaaactgcaagtttagtggctcagttcccatattggtgcaacgcaatcgaaaactcctggctttggattggcaa 336  Q
    ||||||||||| |||| ||||||  ||||||||||||||||||||||||  | ||||||||||||||| || ||| |||||||||||||||||||| | |    
T  43215260 taaaatcttgattgacgtggttatagaaaactgcaagtttagtggctcatattccatattggtgcaacacattcggaaactcctggctttggattgacga 43215359  T
Q  337 gtccaatttcgtcatacttggagggagggtaatcgatgtgctgattggttggctaattttaacctttctctagactcatttaa 419  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||| ||| ||||   ||||||||||||| |||||    
T  43215360 gtccaatttcagcatacttggagggagggtaatcgatgtgctgattggttggttaactttacattttctctagactcttttaa 43215442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 181
Target Start/End: Complemental strand, 34633598 - 34633426
Alignment:
Q  9 tgaaggttggattaaacccaatagtgacggtgcttgcaaaggaaatggagaatattcaagttgtggtggcctctttcgcgactctgaagggagatggcta 108  Q
    ||||||| |||| |||| ||| |||| || |||||||||||||  ||||||  ||||| ||||| ||||||| ||| || ||||| | || | |||| ||    
T  34633598 tgaaggtcggataaaactcaacagtggcgatgcttgcaaaggaggtggagagaattcacgttgtcgtggccttttttgccactctaatggaatatggtta 34633499  T
Q  109 caaggctacatttaaaagattggagtttgtgatgcacttcatgctgaaatgtggggcatgtatcttggtttgg 181  Q
     |||| ||||||   |||||| |||| |||||  |||||||||||||| | | || |||||||||||||||||    
T  34633498 aaaggttacattaggaagattagagtgtgtgacacacttcatgctgaattataggccatgtatcttggtttgg 34633426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 43328964 - 43328910
Alignment:
Q  127 attggagtttgtgatgcacttcatgctgaaatgtggggcatgtatcttggtttgg 181  Q
    |||||| | ||||||||  ||||||||||||||||||||||||| || |||||||    
T  43328964 attggaatgtgtgatgcttttcatgctgaaatgtggggcatgtacctaggtttgg 43328910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 444
Target Start/End: Original strand, 7416993 - 7417431
Alignment:
Q  1 aaaccccgtgaaggttggattaaacccaatagtgacggtgcttgcaaaggaaatggagaatattcaagttgtggtggcctctttcgcgactctgaaggga 100  Q
    ||||||| ||||||||||||||||| ||||||||| |||||||||||||||| |||||| |||||| ||||||||||||||||||||||| ||||||||     
T  7416993 aaaccccctgaaggttggattaaactcaatagtgatggtgcttgcaaaggaagtggagattattcaggttgtggtggcctctttcgcgacactgaagggg 7417092  T
Q  101 gatggctacaaggctacatttaaaagattggagtttgtgatgcacttcatgctgaaatgtggggcatgtatcttggtttgggtttggagatggcttggtg 200  Q
    ||||||||  ||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||      ||||||| | |||| |    
T  7417093 gatggctaagaggctacattcgaaagattggagtttgtgatgcacttcatgctaaaatgtggggcatgtatcttggtt------tggagatagtttggcg 7417186  T
Q  201 aaagcacattccgcaactcattgttaaaagtgattctaaaatcttgaatgacatggttacggaaaactgcaagtttagtggctcagttcccatattggtg 300  Q
    | ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||| |||    
T  7417187 agagcacattccgcaactcattgttaaaagtaattctaaaatcttgattgacatggttacagaaaactacaagtttagtggctcagttcccatatttgtg 7417286  T
Q  301 caacgcaatcgaaaactcctggctttggattggcaagtccaatttcgtcatacttggagggagggtaatcgatgtgctgattggttggctaattttaacc 400  Q
    ||||||| |||||||||| ||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||| |     
T  7417287 caacgcattcgaaaactcatggctttggattggcgagtccaattttgtcatacttgaagggagggtaatcgatgtgctgattggttggctaactttagct 7417386  T
Q  401 tttctctagactcatttaactg-atcataacggagaatcagtcca 444  Q
    ||||||||||||| ||||| || ||||||| |||||||| |||||    
T  7417387 tttctctagactcttttaattgtatcataatggagaatccgtcca 7417431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 9 - 444
Target Start/End: Original strand, 7424128 - 7424558
Alignment:
Q  9 tgaaggttggattaaacccaatagtgacggtgcttgcaaaggaaatggagaatattcaagttgtggtggcctctttcgcgactctgaagggagatggcta 108  Q
    ||||||||||||||||| ||||||||| |||||||||||| ||| |||||| |||||| |||||||||||||||||| |||| |||||||| ||||||||    
T  7424128 tgaaggttggattaaactcaatagtgatggtgcttgcaaatgaagtggagattattcaggttgtggtggcctctttcacgacactgaagggggatggcta 7424227  T
Q  109 caaggctacatttaaaagattggagtttgtgatgcacttcatgctgaaatgtggggcatgtatcttggtttgggtttggagatggcttggtgaaagcaca 208  Q
     |||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||| || || |||    
T  7424228 aaaggctacattcgaaatattggagtttgtgatgcacttcatgctgaaatgtggggcatgtatcttggtt------tggagatggcttggcgagagtaca 7424321  T
Q  209 ttccgcaactcattgttaaaagtgattctaaaatcttgaatgacatggttacggaaaactgcaagtttagtggctcagttcccatattggtgcaacgcaa 308  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||     
T  7424322 ttccgcaactcattgttaaaagtgattctaaaatcttgattgacatggttatagaaaactacaagtttagtggctcagttcccatattggtgcaacgcat 7424421  T
Q  309 tcgaaaactcctggctttggattggcaagtccaatttcgtcatacttggagggagggtaatcgatgtgctgattggttggctaattttaacctttctcta 408  Q
    |||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||    
T  7424422 tcgaaaactcatggctttggattggcgagtccaattttgtcatacttggagggagggtaatcgatgtgctgattggtttgctaactttaacttttctcta 7424521  T
Q  409 gactcatttaactg-atcataacggagaatcagtcca 444  Q
     |||| ||||| || ||||||| |||||||| |||||    
T  7424522 aactcttttaattgtatcataatggagaatccgtcca 7424558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 263 - 444
Target Start/End: Original strand, 7413302 - 7413484
Alignment:
Q  263 aaaactgcaagtttagtggctcagttcccatattggtgcaacgcaatcgaaaactcctggctttggattggcaagtccaatttcgtcatacttggaggga 362  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||| ||||||||||||||||    
T  7413302 aaaactacaagtttagtggctcagttcccatattggtgcaacgcattcgaaaactcatggctttggattggcgagtccaattttgtcatacttggaggga 7413401  T
Q  363 gggtaatcgatgtgctgattggttggctaattttaacctttctctagactcatttaactg-atcataacggagaatcagtcca 444  Q
    |||||||||||||||||||||||||||||| |||| | | ||||||||||| ||||| || |||||||||||||||| |||||    
T  7413402 gggtaatcgatgtgctgattggttggctaactttagcttatctctagactcttttaattgtatcataacggagaatccgtcca 7413484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 6323288 - 6323108
Alignment:
Q  1 aaaccccgtgaaggttggattaaacccaatagtgacggtgcttgcaaaggaaatggagaatattcaagttgtggtggcctctttcgcgactctgaaggga 100  Q
    ||||||| |||||||||||| |||| ||| ||||||||||||||||||||   ||||||  ||||| | || |||||||| ||||||  ||| || || |    
T  6323288 aaaccccctgaaggttggataaaactcaacagtgacggtgcttgcaaaggtggtggagagaattcaggctgcggtggcctttttcgcagctcagatggaa 6323189  T
Q  101 gatggctacaaggctacatttaaaagattggagtttgtgatgcacttcatgctgaaatgtggggcatgtatcttggtttgg 181  Q
     ||||||| |||||||||||  |||| ||||||| ||||| || |||||||||||| ||||||||||||| ||||||||||    
T  6323188 tatggctaaaaggctacattagaaaggttggagtgtgtgacgcgcttcatgctgaattgtggggcatgtaccttggtttgg 6323108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 377
Target Start/End: Original strand, 3061123 - 3061180
Alignment:
Q  320 tggctttggattggcaagtccaatttcgtcatacttggagggagggtaatcgatgtgc 377  Q
    ||||||||||||| || |||||||||||||||||||| ||||||| |||||| |||||    
T  3061123 tggctttggattgacatgtccaatttcgtcatacttgaagggaggataatcgttgtgc 3061180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 413
Target Start/End: Complemental strand, 6322972 - 6322882
Alignment:
Q  323 ctttggattggcaagtccaatttcgtcatacttggagggagggtaatcgatgtgctgattggttggctaattttaacctttctctagactc 413  Q
    |||| |||||||| ||||| |||| | |||||||||| |||||||| || |||||||||||| || | |  |||| ||||||| |||||||    
T  6322972 ctttagattggcatgtccagtttcattatacttggagagagggtaaacgttgtgctgattggctgacgacctttatcctttctttagactc 6322882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 179
Target Start/End: Original strand, 3060910 - 3060990
Alignment:
Q  100 agatggctacaaggctacatttaaaagattggagtttgtgatgcacttcatgctgaaatgt-ggggcatgtatcttggttt 179  Q
    |||||| || |||||||| ||  |||||||||||| ||||||   |||||||||||| ||| || ||||||||||||||||    
T  3060910 agatggttaaaaggctactttagaaagattggagtgtgtgatatgcttcatgctgaattgtaggagcatgtatcttggttt 3060990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 31027338 - 31027742
Alignment:
Q  1 aaaccccgtgaaggttggattaaacccaatagtgacggtgcttgcaaaggaaatggagaatattcaagttgtggtggcctctttcgcgactctgaaggga 100  Q
    ||||||| ||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||| ||||||||| |||||||||| ||||||||||||    
T  31027338 aaaccccttgaaggttggattaaactcaatagtgatggtgcttgcaaaggaagtggagaatattcaggttgtggtg-cctctttcgcaactctgaaggga 31027436  T
Q  101 gatggctacaaggctacatttaaaagattggagtttgtgatgcacttcatgctgaaatgtggggcatgtatcttggtttgggtttggagatggcttggtg 200  Q
    |||||||| || ||||||||  |||||||| ||| ||||||||||||||| |||||||||  ||||||||||||||||      |||||||||||||| |    
T  31027437 gatggctaaaatgctacattcgaaagattgaagtgtgtgatgcacttcatactgaaatgtaaggcatgtatcttggtt------tggagatggcttggcg 31027530  T
Q  201 aaagcacattccgcaactcattgttaaaagtgattctaaaatcttgaatgacatggttacggaaaactgcaagtttagtggctcagttcccatattggtg 300  Q
    | |||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||  |||||||||| |||||||||||| ||||||||||||||    
T  31027531 agagcacattccacaactcattgttgaaagtgattctaaaatcttgattgacatggttacaaaaaactgcaaatttagtggctcaattcccatattggtg 31027630  T
Q  301 caacgcaatcgaaaactcctggctttggattggcaagtccaatttcgtcatacttggagggagggtaatcgatgtgctgattggttggctaattttaacc 400  Q
     ||| || ||||||||| |||||||||||||| | ||||||||||| |||||||||||||||| |||||| | |||||||||||||| |||| |||| |     
T  31027631 gaacacattcgaaaacttctggctttggattgacgagtccaatttcatcatacttggagggagagtaatcaacgtgctgattggttgcctaactttagct 31027730  T
Q  401 tttctctagact 412  Q
    ||||||||||||    
T  31027731 tttctctagact 31027742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 83 - 181
Target Start/End: Original strand, 14024735 - 14024833
Alignment:
Q  83 ttcgcgactctgaagggagatggctacaaggctacatttaaaagattggagtttgtgatgcacttcatgctgaaatgtggggcatgtatcttggtttgg 181  Q
    |||| |||||||| || |||||| |  |||||||| |  | ||||||||| | ||||||||  ||||||||||||||||||||||||| ||||||||||    
T  14024735 ttcgagactctgatggcagatggatcaaaggctacttcaagaagattggaatgtgtgatgcttttcatgctgaaatgtggggcatgtaccttggtttgg 14024833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 181
Target Start/End: Original strand, 32386288 - 32386386
Alignment:
Q  83 ttcgcgactctgaagggagatggctacaaggctacatttaaaagattggagtttgtgatgcacttcatgctgaaatgtggggcatgtatcttggtttgg 181  Q
    |||| |||||||| || |||||| |  |||||||| |  | ||||||||| | ||||||||  ||||||||||||||||||||||||| || |||||||    
T  32386288 ttcgagactctgatggaagatggatcaaaggctacttcaagaagattggaatgtgtgatgcttttcatgctgaaatgtggggcatgtacctaggtttgg 32386386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 33688155 - 33687744
Alignment:
Q  1 aaaccccgtgaaggttggattaaacccaatagtgacggtgcttgcaaaggaaatggagaatattcaagttgtggtggcctctttcgcgactctgaaggga 100  Q
    ||||||| ||||||||||||||||| |||||||| || ||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||    
T  33688155 aaaccccctgaaggttggattaaactcaatagtggcgttgcttgcaaagaaagtggagaatattcaagttgtggtggtctctttcgcgactctgaaggga 33688056  T
Q  101 gatggctacaaggctacatttaaaagattggagtttgtgatgcacttcatgctgaaatgtggggcatgtatcttggtttgggtttggagatggcttggtg 200  Q
    |||||||| || |||| |||  |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |      |||||||||      
T  33688055 gatggctaaaatgcta-attcgaaaggttggagtttgtgatacacttcatgctgaaatgtggggcatgtatcttggtttggat------atggcttggca 33687963  T
Q  201 aaagcacattccgcaactcattgttaaaagtgattctaaaatcttgaatgacatggttacggaaaactgcaagtttagtggctcagttcccatattggtg 300  Q
    | ||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||  | |||||||||||||  |||||||||||||||||||||    
T  33687962 agagcacattccgcaactcattgttgaaagtaattctaaaatcttgattgacatggttacaaataactgcaagtttaacggctcagttcccatattggtg 33687863  T
Q  301 caacgcaatcgaaaactcctggctttggattggcaagtccaatttcgtcatacttggagggagggtaatcgatgtgctgattggttggctaattttaacc 400  Q
    |||| || ||  |||||| ||||||| ||||| | |||  |||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||     
T  33687862 caacacattcagaaactcttggctttagattgacgagtttaatttcgtcatacttggagggagggttatcgatgtgttgattggttggctaactttaact 33687763  T
Q  401 tttctctagactcatttaa 419  Q
    |||||||| |||| |||||    
T  33687762 tttctctatactcttttaa 33687744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 252 - 444
Target Start/End: Complemental strand, 34104059 - 34103866
Alignment:
Q  252 catggttacggaaaactgcaagtttagtggctcagttcccatattggtgcaacgcaatcgaaaactcctggctttggattggcaagtccaatttcgtcat 351  Q
    |||||||||  ||||||||||||||||||||| ||||||||||||||||||| ||| ||| |||| | ||||||||||||||| ||||||  ||| ||||    
T  34104059 catggttacaaaaaactgcaagtttagtggcttagttcccatattggtgcaatgcattcggaaacacttggctttggattggcgagtccatgttcatcat 34103960  T
Q  352 acttggagggagggtaatcgatgtgctgattggttggctaattttaacctttctctagactcatttaactg-atcataacggagaatcagtcca 444  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||| || |||| || |||||||| |||||    
T  34103959 acttggagggagggtaatcgatgtgctgattggttggctaactttaacttttctctagactcttttaattgtatcagaatggagaatccgtcca 34103866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 249 - 419
Target Start/End: Original strand, 55952171 - 55952342
Alignment:
Q  249 tgacatggttacggaaaactgcaagtttagtggctcagttcccatattggtgcaacgcaatcgaaaactcctggctttg-gattggcaagtccaatttcg 347  Q
    |||||||||| |  ||| |||||||||||  ||||| ||||||||||| || ||||| | || |||||| ||| ||||  ||||||| | |||||||| |    
T  55952171 tgacatggttccaaaaatctgcaagtttaagggctcggttcccatattagtacaacgtattcaaaaacttctgacttttagattggcgaatccaatttag 55952270  T
Q  348 tcatacttggagggagggtaatcgatgtgctgattggttggctaattttaacctttctctagactcatttaa 419  Q
    ||||||||| |||||||||||||||||| || ||||||||| ||| |||||| ||||||||||||| |||||    
T  55952271 tcatacttgaagggagggtaatcgatgtactaattggttggttaactttaacttttctctagactcttttaa 55952342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 83 - 181
Target Start/End: Original strand, 1369234 - 1369332
Alignment:
Q  83 ttcgcgactctgaagggagatggctacaaggctacatttaaaagattggagtttgtgatgcacttcatgctgaaatgtggggcatgtatcttggtttgg 181  Q
    |||| |||||||| || |||||| |  |||||||| |  | ||||||||| | ||||||||  ||||||||||||||||||||||||| ||||||||||    
T  1369234 ttcgagactctgatggcagatggatcaaaggctacttcaagaagattggaatgtgtgatgcttttcatgctgaaatgtggggcatgtaccttggtttgg 1369332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 83 - 181
Target Start/End: Complemental strand, 28945675 - 28945577
Alignment:
Q  83 ttcgcgactctgaagggagatggctacaaggctacatttaaaagattggagtttgtgatgcacttcatgctgaaatgtggggcatgtatcttggtttgg 181  Q
    |||| |||||||| || |||||| |  |||||||| |  | ||||||||| | ||||||||  ||||||||||||||||||||||||| ||||||||||    
T  28945675 ttcgagactctgatggcagatggatcaaaggctacttcaagaagattggaatgtgtgatgcttttcatgctgaaatgtggggcatgtaccttggtttgg 28945577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 181
Target Start/End: Complemental strand, 36859115 - 36859017
Alignment:
Q  83 ttcgcgactctgaagggagatggctacaaggctacatttaaaagattggagtttgtgatgcacttcatgctgaaatgtggggcatgtatcttggtttgg 181  Q
    |||| |||||||| || |||||| |  |||||||| |  | ||||||||| | ||||||||  ||||||||||||||||||||||||| || |||||||    
T  36859115 ttcgagactctgatggtagatggatcaaaggctacttcaagaagattggaatgtgtgatgcttttcatgctgaaatgtggggcatgtacctaggtttgg 36859017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 44307377 - 44307422
Alignment:
Q  136 tgtgatgcacttcatgctgaaatgtggggcatgtatcttggtttgg 181  Q
    ||||||||  ||||||||||||||||||||||||| || |||||||    
T  44307377 tgtgatgcttttcatgctgaaatgtggggcatgtacctaggtttgg 44307422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 7e-50; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 181 - 397
Target Start/End: Complemental strand, 6092335 - 6092133
Alignment:
Q  181 ggtttggagatggcttggtgaaagcacattccgcaactcattgttaaaagtgattctaaaatcttgaatgacatggttacggaaaactgcaagtttagtg 280  Q
    |||||||||||||||||  || |||||||| |||||||||||||| ||||||||||||||||||||| |||||||||| | |||||||||||||||||||    
T  6092335 ggtttggagatggcttgacgagagcacatttcgcaactcattgttgaaagtgattctaaaatcttgattgacatggttgcagaaaactgcaagtttagtg 6092236  T
Q  281 gctcagttcccatattggtgcaacgcaatcgaaaactcctggctttggattggcaagtccaatttcgtcatacttggagggagggtaatcgatgtgctga 380  Q
    ||     |||||||||||||||          ||||||||| |||| ||||||| ||||||||||||||||||||||| ||||||||||||||||| ||     
T  6092235 gc-----tcccatattggtgca---------caaactcctgactttcgattggcgagtccaatttcgtcatacttggaaggagggtaatcgatgtgttgg 6092150  T
Q  381 ttggttggctaatttta 397  Q
    |||||||||||| ||||    
T  6092149 ttggttggctaacttta 6092133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 9 - 419
Target Start/End: Original strand, 3999380 - 3999782
Alignment:
Q  9 tgaaggttggattaaacccaatagtgacggtgcttgcaaaggaaatggagaatattcaagttgtggtggcctctttcgcgactctgaagggagatggcta 108  Q
    |||||| |||||||||| ||||||||| |||| || |||||||| ||| ||||||||| | |||||||  ||||| | | ||| ||||| ||||||| ||    
T  3999380 tgaaggctggattaaactcaatagtgatggtgtttacaaaggaagtggggaatattcaggatgtggtgatctcttccacaactatgaagtgagatggtta 3999479  T
Q  109 caaggctacatttaaaagattggagtttgtgatgcacttcatgctgaaatgtggggcatgtatcttggtttgggtttggagatggcttggtgaaagcaca 208  Q
     |||||||||||   || ||| ||||  ||||||||||||||| |||||| | | |||||||||    ||| ||||||| |||||||||  || ||| ||    
T  3999480 aaaggctacattcggaaaattagagtgcgtgatgcacttcatgttgaaatatagtgcatgtatc----ttttggtttggtgatggcttgaagagagcgca 3999575  T
Q  209 ttccgcaactcattgttaaaagtgattctaaaatcttgaatgacatggttac-ggaaaactgcaagtttagtggctcagttcccatattggtgcaacgca 307  Q
    |||  | ||||||| || ||||||||  |||||||||||      |||||||   |||||| |||||||||||| ||| ||| ||| |||||  ||||||    
T  3999576 ttctactactcattattgaaagtgataataaaatcttga-----ttggttacaaaaaaactacaagtttagtggatcaattcacatgttggtataacgca 3999670  T
Q  308 atcgaaaactcctggctttggattggcaagtccaatttcgtcatacttggagggagggtaatcgatgtgctgattggttggctaattttaacctttctct 407  Q
     ||| |||||| ||||||||||||||| | ||   |||||| || ||| |||||||||||||   |||| | ||||||| | ||||||||   |||||||    
T  3999671 ttcgcaaactcttggctttggattggcgaatcaggtttcgttattctttgagggagggtaataagtgtgttaattggtttgataattttacattttctct 3999770  T
Q  408 agactcatttaa 419  Q
    |||||| |||||    
T  3999771 agactcctttaa 3999782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 83 - 181
Target Start/End: Original strand, 46045707 - 46045805
Alignment:
Q  83 ttcgcgactctgaagggagatggctacaaggctacatttaaaagattggagtttgtgatgcacttcatgctgaaatgtggggcatgtatcttggtttgg 181  Q
    |||| |||||||| || |||||| |  |||||||| |  | ||||||||| | ||||||||  ||||||||||||||||||||||||| ||||||||||    
T  46045707 ttcgagactctgatggcagatggatcaaaggctacttcaagaagattggaatgtgtgatgcttttcatgctgaaatgtggggcatgtaccttggtttgg 46045805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 181
Target Start/End: Original strand, 8035511 - 8035609
Alignment:
Q  83 ttcgcgactctgaagggagatggctacaaggctacatttaaaagattggagtttgtgatgcacttcatgctgaaatgtggggcatgtatcttggtttgg 181  Q
    |||| |||||||| || |||||| |  |||||||| |  | ||||||||| | ||||||||  ||||||||||||||||||||||||| || |||||||    
T  8035511 ttcgagactctgatggcagatggatcaaaggctacttcaagaagattggaatgtgtgatgcttttcatgctgaaatgtggggcatgtacctaggtttgg 8035609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 181
Target Start/End: Complemental strand, 45033985 - 45033887
Alignment:
Q  83 ttcgcgactctgaagggagatggctacaaggctacatttaaaagattggagtttgtgatgcacttcatgctgaaatgtggggcatgtatcttggtttgg 181  Q
    |||| |||||||| || |||||| |  |||||||| |  | ||||||| | | ||||||||  ||||||||||||||||||||||||| || |||||||    
T  45033985 ttcgagactctgatggcagatggatcaaaggctacttcaagaagattgaaatgtgtgatgcttttcatgctgaaatgtggggcatgtacctaggtttgg 45033887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 180
Target Start/End: Complemental strand, 38110981 - 38110884
Alignment:
Q  83 ttcgcgactctgaagggagatggctacaaggctacatttaaaagattggagtttgtgatgcacttcatgctgaaatgtggggcatgtatcttggtttg 180  Q
    |||| |||||||| || |||||| |  |||||||| |  | ||||||||| | ||||||||  ||||||||||||| ||||||||||| || ||||||    
T  38110981 ttcgagactctgatggcagatggatcaaaggctacttcaagaagattggaatgtgtgatgcttttcatgctgaaatatggggcatgtacctaggtttg 38110884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 10 - 405
Target Start/End: Complemental strand, 3871556 - 3871167
Alignment:
Q  10 gaaggttggattaaacccaatagtgacggtgcttgcaaaggaaatggagaatattcaagttgtggtggcctctttcgcgactctgaagggagatggctac 109  Q
    ||||||||||| |||| |||  |||||||||||||||||||   ||||||  ||||| |||||||||| || ||| || ||| ||| || |||| | ||     
T  3871556 gaaggttggataaaactcaacggtgacggtgcttgcaaaggtggtggagagaattcaggttgtggtgggcttttttgcaactatgatggaagattgttaa 3871457  T
Q  110 aaggctacatttaaaagattggagtttgtgatgcacttcatgctgaaatgtggggcatgtatcttggtttgggtttggagatggcttggtgaaagcacat 209  Q
    || ||||||||  |||| ||||||| |||||  | |||||||||||| ||||||||||||||||||||      ||||| ||||||||| || | || ||    
T  3871456 aatgctacattagaaaggttggagtgtgtgacacgcttcatgctgaattgtggggcatgtatcttggt------ttggatatggcttggcgagaacatat 3871363  T
Q  210 tccgcaactcattgttaaaagtgattctaaaa-tcttgaatgacatggttacggaaaactgcaagtttagtggctcagttcccatattggtgcaacgcaa 308  Q
    ||| |||||| ||||  |||| || ||||||| |||| | ||| |||||||| |     || |||||||||||  |  ||||||  |||||||  || |     
T  3871362 tccacaactcgttgtggaaagcgactctaaaactctt-attgatatggttactggtggttgtaagtttagtggagccattcccacgttggtgcggcgtat 3871264  T
Q  309 tcgaaaactcctggctttggattggcaagtccaatttcgtcatacttggagggagggtaatcgatgtgctgattggttggctaattttaacctttct 405  Q
    ||| || ||  |||||||||||||||| ||||| |||||||||||||||| |||||| ||||| ||||| |||||| |||| | ||||| |||||||    
T  3871263 tcgcaaccttttggctttggattggcatgtccagtttcgtcatacttggaaggagggcaatcgttgtgcagattggctggcgacttttagcctttct 3871167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 83 - 181
Target Start/End: Original strand, 42865717 - 42865815
Alignment:
Q  83 ttcgcgactctgaagggagatggctacaaggctacatttaaaagattggagtttgtgatgcacttcatgctgaaatgtggggcatgtatcttggtttgg 181  Q
    |||| |||||||| || |||||| |  |||||||| |  | ||||||||| | ||||||||  ||||||||||||||||||||||||| ||||||||||    
T  42865717 ttcgagactctgatggcagatggatcaaaggctacttcaagaagattggaatgtgtgatgcttttcatgctgaaatgtggggcatgtaccttggtttgg 42865815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 181
Target Start/End: Complemental strand, 11996042 - 11995944
Alignment:
Q  83 ttcgcgactctgaagggagatggctacaaggctacatttaaaagattggagtttgtgatgcacttcatgctgaaatgtggggcatgtatcttggtttgg 181  Q
    |||| |||||||| || |||||| |  |||||||| |  | ||||||||| | ||||||||  ||||||||||||||||||||||||| || |||||||    
T  11996042 ttcgagactctgatggcagatggatcaaaggctacttcaagaagattggaatgtgtgatgcttttcatgctgaaatgtggggcatgtacctaggtttgg 11995944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 83 - 180
Target Start/End: Complemental strand, 24126722 - 24126625
Alignment:
Q  83 ttcgcgactctgaagggagatggctacaaggctacatttaaaagattggagtttgtgatgcacttcatgctgaaatgtggggcatgtatcttggtttg 180  Q
    |||| |||||||| || |||||| |  |||||||| |  | ||||||||| | ||||||||  ||||||||||||||||||||||||| || ||||||    
T  24126722 ttcgagactctgatggcagatggatcaaaggctacttcaagaagattggaatgtgtgatgcttttcatgctgaaatgtggggcatgtacctaggtttg 24126625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 408
Target Start/End: Complemental strand, 35008450 - 35008364
Alignment:
Q  322 gctttggattggcaagtccaatttcgtcatacttggagggagggtaatcgatgtgctgattggttggctaattttaacctttctcta 408  Q
    ||||||||||||  |||||||||||||| ||| || | | ||| ||||||||||| | ||||||||  || ||||| ||||||||||    
T  35008450 gctttggattggtgagtccaatttcgtcgtacatgaatgaaggataatcgatgtgtttattggttgattagttttagcctttctcta 35008364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 11 - 181
Target Start/End: Complemental strand, 46011612 - 46011442
Alignment:
Q  11 aaggttggattaaacccaatagtgacggtgcttgcaaaggaaatggagaatattcaagttgtggtggcctctttcgcgactctgaagggagatggctaca 110  Q
    |||||||||| |||| |||||||||| |||| |||||||    ||||||  | | | | |||||||| || ||||||| ||| || |  ||||||||| |    
T  46011612 aaggttggataaaactcaatagtgacagtgcctgcaaagatggtggagagaaattagggtgtggtggtctttttcgcggctcagatgaaagatggctaaa 46011513  T
Q  111 aggctacatttaaaagattggagtttgtgatgcacttcatgctgaaatgtggggcatgtatcttggtttgg 181  Q
    ||||||||||  |||| ||||||| ||||| || |||||||||||| ||||||||||||| ||||||||||    
T  46011512 aggctacattagaaaggttggagtgtgtgacgcgcttcatgctgaattgtggggcatgtaccttggtttgg 46011442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 54 - 181
Target Start/End: Complemental strand, 36837077 - 36836950
Alignment:
Q  54 tggagaatattcaagttgtggtggcctctttcgcgactctgaagggagatggctacaaggctacatttaaaagattggagtttgtgatgcacttcatgct 153  Q
    ||||||| ||||| | ||| ||||||| ||||||   || || || |||||| || |||||||||||  |||| ||||||| |||||||| |||||||||    
T  36837077 tggagaaaattcagggtgtagtggcctttttcgcagatcagatggaagatggttaaaaggctacattggaaaggttggagtgtgtgatgcgcttcatgct 36836978  T
Q  154 gaaatgtggggcatgtatcttggtttgg 181  Q
    ||| |||||||||||||  |||||||||    
T  36836977 gaattgtggggcatgtactttggtttgg 36836950  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 83 - 181
Target Start/End: Original strand, 6293816 - 6293914
Alignment:
Q  83 ttcgcgactctgaagggagatggctacaaggctacatttaaaagattggagtttgtgatgcacttcatgctgaaatgtggggcatgtatcttggtttgg 181  Q
    |||| |||||||| || |||||| |  |||||||| |  | ||||||||| | ||||||||  ||||||||||||||||||||||||| ||||||||||    
T  6293816 ttcgagactctgatggcagatggatcaaaggctacttcaagaagattggaatgtgtgatgcttttcatgctgaaatgtggggcatgtaccttggtttgg 6293914  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 413
Target Start/End: Complemental strand, 36836826 - 36836733
Alignment:
Q  320 tggctttggattggcaagtccaatttcgtcatacttggagggagggtaatcgatgtgctgattggttggctaattttaacctttctctagactc 413  Q
    ||||||| ||||||||  |||| |||||||||||||||||||||| |||||  ||| | |||||| |||| |  |||||||||||| |||||||    
T  36836826 tggctttagattggcatatccagtttcgtcatacttggagggaggataatcattgtacagattggctggcgacctttaacctttctttagactc 36836733  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 16854790 - 16854847
Alignment:
Q  124 aagattggagtttgtgatgcacttcatgctgaaatgtggggcatgtatcttggtttgg 181  Q
    ||||||||| | ||||||||  ||||||||||||||||||||||||| || |||||||    
T  16854790 aagattggaatgtgtgatgcttttcatgctgaaatgtggggcatgtacctaggtttgg 16854847  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 389
Target Start/End: Complemental strand, 46011289 - 46011237
Alignment:
Q  337 gtccaatttcgtcatacttggagggagggtaatcgatgtgctgattggttggc 389  Q
    ||||| |||| |||||||||||||||||||| ||  |||||||||||||||||    
T  46011289 gtccagtttcatcatacttggagggagggtagtctttgtgctgattggttggc 46011237  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 170
Target Start/End: Original strand, 28705790 - 28705878
Alignment:
Q  82 tttcgcgactctgaagggagatggctacaaggctacatttaaaagattggagtttgtgatgcacttcatgctgaaatgtggggcatgta 170  Q
    ||||| ||||||||||| |||||| |  |||||||| |  | ||||||||| | |||||||   |||||| ||||||||||||||||||    
T  28705790 tttcgagactctgaaggcagatggatcaaaggctacttcaagaagattggaatgtgtgatgtttttcatgttgaaatgtggggcatgta 28705878  T

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Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 9 - 181
Target Start/End: Original strand, 27365659 - 27365830
Alignment:
Q  9 tgaaggttggattaaacccaatagtgacggtgcttgcaaaggaaatggagaatattcaagttgtggtggcctctttcgcgactctgaagggagatggcta 108  Q
    |||||||||||| |||| ||| ||||| ||||||| |||||||  ||| || |||||||| ||||||||||| ||  || ||||| ||  || |||  ||    
T  27365659 tgaaggttggataaaactcaagagtgatggtgcttacaaaggaggtggggagtattcaagatgtggtggccttttctgcaactctaaatagatatgatta 27365758  T
Q  109 caaggctacatttaaaagattggagtttgtgatgcacttcatgctgaaatgtggggcatgtatcttggtttgg 181  Q
     ||||||||||  | ||||||| ||| ||| | |||||| |||||||||||||||||||| ||||||||||||    
T  27365759 -aaggctacatacataagattgaagtgtgtaacgcacttaatgctgaaatgtggggcatgcatcttggtttgg 27365830  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 181
Target Start/End: Original strand, 45093241 - 45093339
Alignment:
Q  83 ttcgcgactctgaagggagatggctacaaggctacatttaaaagattggagtttgtgatgcacttcatgctgaaatgtggggcatgtatcttggtttgg 181  Q
    |||| |||||||| || |||||| |  |||||||| |  | ||||||||| | ||||||||  ||||||||||||||||||||||||| || |||||||    
T  45093241 ttcgagactctgatggcagatggattaaaggctacttcaagaagattggaatgtgtgatgcttttcatgctgaaatgtggggcatgtacctaggtttgg 45093339  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 33373039 - 33373096
Alignment:
Q  124 aagattggagtttgtgatgcacttcatgctgaaatgtggggcatgtatcttggtttgg 181  Q
    ||||||||| | ||||||||  ||||||||||||||||||||||||| || |||||||    
T  33373039 aagattggaatgtgtgatgcttttcatgctgaaatgtggggcatgtacctaggtttgg 33373096  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 14343160 - 14343115
Alignment:
Q  136 tgtgatgcacttcatgctgaaatgtggggcatgtatcttggtttgg 181  Q
    ||||||||  |||||||  |||||||||||||||||||||||||||    
T  14343160 tgtgatgcttttcatgccaaaatgtggggcatgtatcttggtttgg 14343115  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 42000118 - 42000175
Alignment:
Q  124 aagattggagtttgtgatgcacttcatgctgaaatgtggggcatgtatcttggtttgg 181  Q
    ||||||||| | |||||||   ||||||||||||||||||||||||| || |||||||    
T  42000118 aagattggaatgtgtgatgtttttcatgctgaaatgtggggcatgtacctaggtttgg 42000175  T

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