View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21095_high_2 (Length: 430)
Name: NF21095_high_2
Description: NF21095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21095_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 151 - 420
Target Start/End: Original strand, 35147140 - 35147417
Alignment:
| Q |
151 |
cgttttctttcataagacttgttgagattttgtttaatggatctaaattttgttctattctgagtaacgtaagtatttgttttataacttcaattatttt |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35147140 |
cgttttctttcataagacttgttgagattttgtttaatggatctaaattttgttctattctgagtaacgtaagtatttgttttataacttcaattatttt |
35147239 |
T |
|
| Q |
251 |
attgaaacaannnnnnn-acaactataaagaattatt----atagtaattaat---atcaatgtgtgaagaaatgataaaatcacaattgtgtcaaagaa |
342 |
Q |
| |
|
| |||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
35147240 |
aatgaaacaattttttttacaactataaagaattatttattatagtaattaataatatcaatgtgtgaagaaatgataaaatcacaattgtgtaaaagaa |
35147339 |
T |
|
| Q |
343 |
aatgaagaaatcatattgttatttccgtccccaccaaagacgtttgccatctgccagtcccatttgctctgtcctatg |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35147340 |
aatgaagaaatcatattgttatttccgtccccaccaaagacgtttgccatctgccagtcccatttgctctgtcttatg |
35147417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 35146549 - 35146698
Alignment:
| Q |
20 |
actaggagttggatttatacaatgaaaattttgttat------------ataacatagtatttatcgacttcgtagtcttagtaggaactaatctccatc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
35146549 |
actaggagttggatttatacaatgaaaattttgttattattattatattataacatagtatttatcgacttcgtagtcgtagtaggaactaatctccatc |
35146648 |
T |
|
| Q |
108 |
ataaaatacaatttggcaatttgctagacttatttttctacctcgttttctt |
159 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||| |||||||| |
|
|
| T |
35146649 |
ataaaatacaatttggtaatttgctag--ttatttttctacctagttttctt |
35146698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University