View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21095_low_1 (Length: 468)
Name: NF21095_low_1
Description: NF21095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21095_low_1 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 217 - 468
Target Start/End: Original strand, 35332180 - 35332446
Alignment:
| Q |
217 |
tagccatttttcagtgaagctgaatctaaataacccttatatcactctttcattcaaatgtgaaaaatcaaactttttctcctcacaccccccaaaacac |
316 |
Q |
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| T |
35332180 |
tagccatttttcagtgaagctgaatctaaataacccttatatcactctttcattcaaatgtgaaaaatcaaactttttctcctcacaccccccaaaacac |
35332279 |
T |
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| Q |
317 |
aacaccccattttctcatattttctcataacccaaacaga---------------aacagaacaaacctttatggcttttacgcctacgcttggaaactt |
401 |
Q |
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| T |
35332280 |
aacaccccattttctcatattttctcataacccaaacagaaacagaaacagaaacaacagaacaaacctttatggcttttacgcctacgcttggaaactt |
35332379 |
T |
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| Q |
402 |
tgtgactgatgtagcaatagtaagaaaaggcaacaaaagtagcaaaaacagcaagagaagcaagtac |
468 |
Q |
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| T |
35332380 |
tgtgactgatgtagcaatagtaagaaaaggcaacaaaagtagcaaaaacagcaagagaagcaagtac |
35332446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 35331965 - 35332113
Alignment:
| Q |
1 |
tattatttctttttcatttctctctcttgtaaatacattaaagtcatagtgattttctcaccacaaagtcaccgaatctttatcccaaaatagactacat |
100 |
Q |
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| T |
35331965 |
tattatttctttttcatttctctctcttgtaaatacattaaagtcatagtgattttctcaccacaaagtcaccgaatctttatcccaaaatagactccat |
35332064 |
T |
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| Q |
101 |
tattcactaatttttgcagatactccacaagatccaaattaagggttgg |
149 |
Q |
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| T |
35332065 |
tattcactaatttttgcagatactccacaagatccaaatcaagggttgg |
35332113 |
T |
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