View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21096_high_10 (Length: 334)
Name: NF21096_high_10
Description: NF21096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21096_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 322
Target Start/End: Original strand, 22687883 - 22688188
Alignment:
| Q |
17 |
caccaagtgtgtcaaaaccatctgaaatttgtgaaattgaggaggtggaaaagcaagttcaaatccatgaaaagggtgttaaagaaagtgataaaaatga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22687883 |
caccaagtgtgtcaaaaccatctgaaatttgtgaaattgaggaggtggaaaagcaagttcaaatccatgaaaagggtgttaaagaaagtgataaaaatga |
22687982 |
T |
|
| Q |
117 |
gaactttgatattcaatgtaggtgcttagatgaagtggattcattaggattgttactgatcaatgatcgcgcgaggtacttgataaactggttggtgaat |
216 |
Q |
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||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22687983 |
acactttgatattgaatgtaggtgcttagatcaagtggattctttaggattgttactgatcaatgatcgcgcgaggtacttgataaactggttggtgaat |
22688082 |
T |
|
| Q |
217 |
tcgatgttgaagcttaagcatcctaacacagaaggggtttctctagtgaagatttatggtccaaaagttaaatttgatagaggacctgcaattgcattca |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
22688083 |
tcgatgttgaagcttaagcatcctaacacagaaggggtttctctagtgacgatttatggtccaaaagtaaaatttgatagaggacctgcaattgcattca |
22688182 |
T |
|
| Q |
317 |
atatat |
322 |
Q |
| |
|
|||||| |
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| T |
22688183 |
atatat |
22688188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 322
Target Start/End: Complemental strand, 22751185 - 22750880
Alignment:
| Q |
17 |
caccaagtgtgtcaaaaccatctgaaatttgtgaaattgaggaggtggaaaagcaagttcaaatccatgaaaagggtgttaaagaaagtgataaaaatga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22751185 |
caccaagtgtgtcaaaaccatctgaaatttgtgaaattgaggaggtggaaaagcaagttcaaatccatgaaaagggtgttaaagaaagtgataaaaatga |
22751086 |
T |
|
| Q |
117 |
gaactttgatattcaatgtaggtgcttagatgaagtggattcattaggattgttactgatcaatgatcgcgcgaggtacttgataaactggttggtgaat |
216 |
Q |
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||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22751085 |
acactttgatattgaatgtaggtgcttagatcaagtggattctttaggattgttactgatcaatgatcgcgcgaggtacttgataaactggttggtgaat |
22750986 |
T |
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| Q |
217 |
tcgatgttgaagcttaagcatcctaacacagaaggggtttctctagtgaagatttatggtccaaaagttaaatttgatagaggacctgcaattgcattca |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
22750985 |
tcgatgttgaagcttaagcatcctaacacagaaggggtttctctagtgacgatttatggtccaaaagtaaaatttgatagaggacctgcaattgcattca |
22750886 |
T |
|
| Q |
317 |
atatat |
322 |
Q |
| |
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|||||| |
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| T |
22750885 |
atatat |
22750880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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