View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21096_high_11 (Length: 327)
Name: NF21096_high_11
Description: NF21096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21096_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 8939072 - 8939290
Alignment:
| Q |
1 |
tagggggcggttagaggacacatgtacggtgtatgatgcacagaggcgtgctctaatgtggtatggtgcactgacgttggagtgttccttcaggcgatgc |
100 |
Q |
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| T |
8939072 |
tagggagcggttagaggacacatgtacggtgtttgatgcacggaggcgtgctctaatgtggtacggtgcactgacgttggcgtgttccttcaggcgatgc |
8939171 |
T |
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| Q |
101 |
gccttagtcagtggacgtttagtccacgtatcatcgttgtattgaccttctggccggtccagaacagttataacattattttctttgtctagtgttatta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8939172 |
gccttagtcagtggacgtttagtccacgtatcatcgttgtattgaccttctggccagtccagaacagttataacattattttctttgtctagtgttatta |
8939271 |
T |
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| Q |
201 |
gttttcataagtttcgaac |
219 |
Q |
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| T |
8939272 |
gttttcataagtttcgaac |
8939290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 258 - 311
Target Start/End: Original strand, 8939329 - 8939382
Alignment:
| Q |
258 |
caggaactatatggtttaggagctagaaggattggagtaattggtatgccaaat |
311 |
Q |
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| T |
8939329 |
caggaactatatggtttaggagctagaaggattggagtaattggtatgccaaat |
8939382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 258 - 308
Target Start/End: Original strand, 8946862 - 8946912
Alignment:
| Q |
258 |
caggaactatatggtttaggagctagaaggattggagtaattggtatgcca |
308 |
Q |
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| T |
8946862 |
caggaactttatggtttaggagctagaagaattggagtaattggcatgcca |
8946912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 29278967 - 29278862
Alignment:
| Q |
1 |
tagggggcggttagaggacacatgtacggtgtatgatgcacagaggcgtgctctaatgtggtatggtgcactgacgttggagtgttccttcaggcgatgc |
100 |
Q |
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| T |
29278967 |
tagggagcggttagaggacatgtgtatgatgattaatgcacggaggcgtgccctattgtggtacggtgcactgacgctggcgtgttctttcagacaatgc |
29278868 |
T |
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| Q |
101 |
gcctta |
106 |
Q |
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| |||| |
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| T |
29278867 |
gtctta |
29278862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 65 - 169
Target Start/End: Original strand, 13159583 - 13159688
Alignment:
| Q |
65 |
ggtgcactgacgttggagtgttccttcaggcgatgcgcctta-gtcagtggacgtttagtccacgtatcatcgttgtattgaccttctggccggtccaga |
163 |
Q |
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| T |
13159583 |
ggtgcactgatgttggcgtgttccttcaggcgtcgagccttaaggcggtgtatgtttagtccacgtgtcatcgttggattgaccttctggccggtccaga |
13159682 |
T |
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| Q |
164 |
acagtt |
169 |
Q |
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|||||| |
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| T |
13159683 |
acagtt |
13159688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 9573357 - 9573191
Alignment:
| Q |
1 |
tagggggcggttagaggacacatgtacggtgtatgatgcacagaggcgtgctctaatgtggtatggtgcactgacgttggagtgttccttcaggcgatgc |
100 |
Q |
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|||| |||||||||||||||| | || |||| |||||||| ||||| ||||||| || ||| |||| ||| | |||| ||| ||||| ||| |||| |
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| T |
9573357 |
taggaggcggttagaggacacctatatggtgcttgatgcacggaggcatgctctagtgaagtaaggtgtactaatattggcgtgctcctttaggggatga |
9573258 |
T |
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| Q |
101 |
gccttagtcag-tggacgtttagtccacgtatcatcgttgtattgaccttctggccggtccagaaca |
166 |
Q |
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| T |
9573257 |
accttagtctggtggacgtttagtccatttgtcatcattggattgaccttcaagacggtccagaaca |
9573191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 10982025 - 10982085
Alignment:
| Q |
1 |
tagggggcggttagaggacacatgtacggtgtatgatgcacagaggcgtgctctaatgtgg |
61 |
Q |
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||||| |||||||||||||||||||| |||| ||| |||| |||||||||||||||||| |
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| T |
10982025 |
tagggagcggttagaggacacatgtatggtgattgacgcacgaaggcgtgctctaatgtgg |
10982085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 37709258 - 37709185
Alignment:
| Q |
1 |
tagggggcggttagaggacacatgtacggtgtatgatgcacagaggcgtgctctaatgtggtatggtgcactga |
74 |
Q |
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| T |
37709258 |
taggaggcggttagaggacacatgtatggtgtctgatgcacgggggcatgctccagtggagtaaggtgcactga |
37709185 |
T |
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