View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21096_high_13 (Length: 295)
Name: NF21096_high_13
Description: NF21096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21096_high_13 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 88 - 295
Target Start/End: Complemental strand, 32267846 - 32267644
Alignment:
| Q |
88 |
tacaaatatgattcttcatgaatagttttggagaatggataaaagtgttcatatatgtagagtgtagcaagataaattacggtagacatatttttatcat |
187 |
Q |
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| T |
32267846 |
tacaaatatgattcttcatgaatagttttggagaatggataaaagtgttcatatatgtagagtgtagcaagataaattacggtagacatatttttatcat |
32267747 |
T |
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| Q |
188 |
tacatattcggtggatgtaaagaattgnnnnnnnnnnnnnnnnncctaccgtacgtgggttctaaaattcggcacttttgatagtacattgaaacgttgg |
287 |
Q |
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| T |
32267746 |
tacatattcggtggatgtaaagaatt-ttttattttttatttttcctac----cgtgggttctaaaattcggcagttttgatagtacattgaaacgttgg |
32267652 |
T |
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| Q |
288 |
gtcatggt |
295 |
Q |
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|||||||| |
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| T |
32267651 |
gtcatggt |
32267644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 8 - 206
Target Start/End: Complemental strand, 32272030 - 32271836
Alignment:
| Q |
8 |
tcgaagaatatcataacactttcttacaattatttatcgtgtcatttaggaattactatttagtgattccttctaggttctacaaatatgattcttcatg |
107 |
Q |
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| T |
32272030 |
tcgaacaatatcataacactttcttacaattatttgttgtgtcattttggaactactatttagtgatttcttcaagtttctatagatatga---ttcatg |
32271934 |
T |
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| Q |
108 |
aatagttttggagaatggataaaagtgttcatatatgta--gagtgtagcaagataaattacggtagacatatttttatcattacatattcggtggatgt |
205 |
Q |
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| T |
32271933 |
aata-ttttggagaatggataaaagggttcatttatgtattgagtgtagcaagataaattattgtatacatatttttatc--tacatattcggtggatgt |
32271837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 32267901 - 32267860
Alignment:
| Q |
8 |
tcgaagaatatcataacactttcttacaattatttatcgtgt |
49 |
Q |
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| T |
32267901 |
tcgaacaatatcataacactttcttacaattatttatcgtgt |
32267860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 295
Target Start/End: Complemental strand, 32271809 - 32271758
Alignment:
| Q |
241 |
cgtgggttctaaaattcggcacttttgatagtacattgaaacgttgggtcatggt |
295 |
Q |
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| T |
32271809 |
cgtgggttctaaaattcggcacttttga---tacattcaaacgttgggccatggt |
32271758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 48170048 - 48169925
Alignment:
| Q |
14 |
aatatcataacactttcttacaattatttatcgtgtcatttaggaattactatttagtgattccttctaggttctacaaatatgattcttcatgaata-g |
112 |
Q |
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| T |
48170048 |
aatattataacagtttcttacaattatttatcatgtctttttgaaactaccatccaatgattccttctaggttttataaatatga---ttcatgaatatt |
48169952 |
T |
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| Q |
113 |
ttttggagaatggataaaagtgttcat |
139 |
Q |
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| T |
48169951 |
ttttggagaaaggactaaagtgttcat |
48169925 |
T |
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