View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21096_high_2 (Length: 497)
Name: NF21096_high_2
Description: NF21096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21096_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 28 - 332
Target Start/End: Original strand, 33359416 - 33359710
Alignment:
| Q |
28 |
aatttggattatgaatgttccatatcttccctttctcaaataaccctattcaagatataaaatctggcttcctgaaaagnnnnnnnntccccnnnnnnnn |
127 |
Q |
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| T |
33359416 |
aatttggattatgaatgttccatatcttccctttctcaaatcaccctattcaagatataaaatctggcttcctgaaaagaaaaaaaatcccctttttttt |
33359515 |
T |
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| Q |
128 |
agtgaaaattcaaggagaaacgtgagttttttttattgaaaaatatctttggttttatnnnnnnnnnnnnnnnnntaatatctttgtaattaacgataat |
227 |
Q |
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| T |
33359516 |
agtgaaaattcaaggagaaacgtgagttttttt-attgaaaaatatctttggttttataaaaaaaa---------taatatctttgtaattaacgataat |
33359605 |
T |
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| Q |
228 |
aaagtcatttagaattagaatcaccaagtgcagctggcacctctgaaattgaaaaatatccccgatacatccatgtttctactctaacctaaatttttat |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33359606 |
aaagtcatttagaattagaatcaccaagtgcagctggcacctctgaaattgaaaaatatccccgatacatccatgtttctactctaacctaaatttttat |
33359705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 373 - 478
Target Start/End: Original strand, 33359891 - 33359996
Alignment:
| Q |
373 |
atcgtttgtctaaaattataataattcagctttaaaattgattatgaagattgatgaaggactagtttgtttgatcgagagttttgagaccacgaaatgg |
472 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
33359891 |
atcgtttgtctaaaattataataattcagctttaaaattgattatcaagattgatgaaggactagtttgtttgatcgagagttttgagaccacaaagtgg |
33359990 |
T |
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| Q |
473 |
gttgaa |
478 |
Q |
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|||||| |
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| T |
33359991 |
gttgaa |
33359996 |
T |
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