View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21096_low_1 (Length: 562)
Name: NF21096_low_1
Description: NF21096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21096_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 434; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 557
Target Start/End: Original strand, 10243874 - 10244454
Alignment:
| Q |
1 |
ctacaagccaccggtttacaagcctccagtcgagaagccaccagtttacggacctcctcaccacccataggactctcggatgtttttaagtaaataagtt |
100 |
Q |
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| T |
10243874 |
ctacaagccaccggtttacaagcctccagtcgagaagccaccagtttacggacctcctcaccacccataggactctcggatgcttttaagtaaataagtt |
10243973 |
T |
|
| Q |
101 |
aaataagagata-ataaagtttccaaagcaaggattatatattcttggaatcttcattttagtcttttgtttacaaatcctattaccaagataagaatgt |
199 |
Q |
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| T |
10243974 |
aaataagagatatataatgtttccaaagcaaggattatatattcttggaatcttcattttagtcttttgtttacaaatcctattaccaagataagaatgt |
10244073 |
T |
|
| Q |
200 |
gaaagaaaatggtgcatttgtactccaagttatgaataagaatgttgtgatttagcactttttaatttgtgttggttgacttaattggacacag--tata |
297 |
Q |
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| T |
10244074 |
gaaagaaaatggtgcatttgtactccaagttatgaataagaacgttgtgatttagcactttttaatttgtgttggttgactaaattggacatagtatata |
10244173 |
T |
|
| Q |
298 |
tatactctacttaatactctgtcatatcagtaaggtgcatgaaagttcaattttctgt------------gaaaaattaatttatgtttgaatctagaat |
385 |
Q |
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| T |
10244174 |
tatactctacttaatactctgtcatatcagtaaggtgcatgaaagttcaattttctgtagtagacataacgaataattaatttatgtttgaatctagaat |
10244273 |
T |
|
| Q |
386 |
ttactaaacttcacgaacttggaatttcattgcattataacttg-----------gctttagtgaaaaatgattttggtgcttaaaattataagagttgg |
474 |
Q |
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| T |
10244274 |
ttactaaacttcacgtacttggaatttcattgcattatagcttgactcagtagtagctttagtgaaaaatgattttggtgcttaaaattttaagagttgg |
10244373 |
T |
|
| Q |
475 |
agtttggacaaattatacacactcatataatttagttatcttttcaaatttacaattacaattttcaaggttctatatctgtg |
557 |
Q |
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| T |
10244374 |
agtttggacaaattat--acactcatataatttagttatcttttcaaatttacaattacaattttcaaggttctatatttgtg |
10244454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 100 - 297
Target Start/End: Original strand, 10217936 - 10218136
Alignment:
| Q |
100 |
taaataagagata-ataaagtttccaaagcaaggattatatattcttggaa-tcttcattttagtcttttgtttacaaatcctattaccaagataagaat |
197 |
Q |
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| T |
10217936 |
taaataagagatatataaactttccaaagcaaggatcatatattcttggaaatcttcaattcaatcttatgtttacaaatgctattgccaagacaagagt |
10218035 |
T |
|
| Q |
198 |
gtgaaagaaaatggtgc-atttgtactccaagttatgaataagaatgttgtgatttagcactttttaatttgtgttggttgacttaattggacacagtat |
296 |
Q |
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| T |
10218036 |
gtgaaagaaaatggtgccatttgtacttcaaattatgaataagaacgttatgatttagtacttcttattttgtgtttgttgactaaatttgacagagtat |
10218135 |
T |
|
| Q |
297 |
a |
297 |
Q |
| |
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| |
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| T |
10218136 |
a |
10218136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 10217820 - 10217888
Alignment:
| Q |
2 |
tacaagccaccggtttacaagcctccagtcgagaagccaccagtttacggacctcctcaccacccatag |
70 |
Q |
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| T |
10217820 |
tacaagccaccggtttacaagcctccagtcgagaagccaccagtttacggaccacctcaccacccatag |
10217888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 360 - 417
Target Start/End: Original strand, 10218206 - 10218262
Alignment:
| Q |
360 |
aattaatttatgtttgaatctagaatttactaaacttcacgaacttggaatttcattg |
417 |
Q |
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| T |
10218206 |
aattaattaatgtttgaatctcgaatttactaaa-ttaacgaacttgtaatttcattg |
10218262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 10243784 - 10243822
Alignment:
| Q |
1 |
ctacaagccaccggtttacaagcctccagtcgagaagcc |
39 |
Q |
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| T |
10243784 |
ctacaagccacccgtttacaagcctccagttgagaagcc |
10243822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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