View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21096_low_11 (Length: 351)
Name: NF21096_low_11
Description: NF21096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21096_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 285
Target Start/End: Original strand, 26182470 - 26182732
Alignment:
| Q |
19 |
atcaaaagggccacttgaaatcaatacacattcaatcattcatagtatcaaaagcaaggtaataagtaactaattgtcaatctacaatgaggaagcatag |
118 |
Q |
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| T |
26182470 |
atcaaaagggccacttgaaatcaatacacattcaatcattcatagtatcaaaagcaaggtaataa----ctaattgtcaatctacaatgaggaagcataa |
26182565 |
T |
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| Q |
119 |
gttttttctatgaataatatttgtgataaatatgcacacatcaattagcaaaataaataacaaacaacacatcaaaagcatgccttaattttgattaagt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26182566 |
gttttttctatgaataatatttgtgataaatatgcacacatcaattagcaaaataaataacaaacaacacatcaaaagcatgccttaattttgattaagt |
26182665 |
T |
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| Q |
219 |
agaggcatagtacttaactcatccataaaaccatctaattctgaaaaaccatctaagaaaccattga |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26182666 |
agaggcatagtacttaactcatccataaaaccatctaattctgaaaaaccatctaagaaaccattga |
26182732 |
T |
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