View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21096_low_18 (Length: 243)

Name: NF21096_low_18
Description: NF21096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21096_low_18
NF21096_low_18
[»] chr5 (17 HSPs)
chr5 (3-240)||(8938742-8938979)
chr5 (4-165)||(22903000-22903159)
chr5 (14-132)||(16621148-16621264)
chr5 (4-153)||(20025202-20025349)
chr5 (4-168)||(27083263-27083424)
chr5 (4-151)||(19993190-19993335)
chr5 (9-132)||(19846009-19846130)
chr5 (14-153)||(26163554-26163691)
chr5 (12-106)||(25537371-25537463)
chr5 (3-132)||(4477138-4477265)
chr5 (6-107)||(25829015-25829114)
chr5 (11-84)||(22865747-22865820)
chr5 (18-106)||(31202467-31202553)
chr5 (27-91)||(26348127-26348191)
chr5 (15-82)||(26994642-26994709)
chr5 (4-56)||(24647302-24647354)
chr5 (52-84)||(30827056-30827088)
[»] chr2 (20 HSPs)
chr2 (3-154)||(45714913-45715062)
chr2 (4-168)||(12168877-12169039)
chr2 (4-152)||(27846544-27846690)
chr2 (4-153)||(19919091-19919238)
chr2 (4-153)||(45258177-45258324)
chr2 (1-128)||(36022405-36022530)
chr2 (4-151)||(12127688-12127833)
chr2 (4-79)||(3586354-3586429)
chr2 (23-130)||(17671915-17672020)
chr2 (13-89)||(20120328-20120404)
chr2 (15-106)||(29710984-29711073)
chr2 (7-79)||(36267489-36267561)
chr2 (4-79)||(18135862-18135937)
chr2 (12-63)||(24499796-24499847)
chr2 (4-70)||(15825154-15825220)
chr2 (23-131)||(17626842-17626948)
chr2 (4-67)||(18770317-18770380)
chr2 (5-90)||(10923191-10923276)
chr2 (3-84)||(12634832-12634913)
chr2 (36-76)||(31013553-31013593)
[»] chr1 (23 HSPs)
chr1 (4-153)||(33101532-33101679)
chr1 (4-153)||(5459734-5459880)
chr1 (4-134)||(34273025-34273153)
chr1 (4-153)||(5671689-5671836)
chr1 (6-91)||(26977719-26977804)
chr1 (5-140)||(43344469-43344601)
chr1 (4-106)||(14255055-14255155)
chr1 (3-70)||(16050394-16050461)
chr1 (4-79)||(25408087-25408162)
chr1 (4-107)||(48637515-48637617)
chr1 (4-90)||(12177366-12177452)
chr1 (1-140)||(18246075-18246212)
chr1 (5-106)||(4601513-4601612)
chr1 (4-113)||(22414734-22414841)
chr1 (4-107)||(16030360-16030461)
chr1 (23-84)||(3590813-3590874)
chr1 (4-104)||(23728845-23728942)
chr1 (8-84)||(2612692-2612768)
chr1 (112-164)||(23280412-23280464)
chr1 (35-153)||(2141000-2141115)
chr1 (38-76)||(30732511-30732549)
chr1 (12-84)||(23280293-23280365)
chr1 (16-84)||(52565566-52565634)
[»] chr4 (17 HSPs)
chr4 (4-82)||(47253265-47253343)
chr4 (4-104)||(12683753-12683851)
chr4 (3-166)||(10981772-10981933)
chr4 (4-153)||(19809621-19809767)
chr4 (4-90)||(15514586-15514672)
chr4 (16-155)||(3981867-3982002)
chr4 (12-91)||(29157081-29157160)
chr4 (15-85)||(13171064-13171134)
chr4 (4-104)||(15742178-15742276)
chr4 (90-156)||(40979169-40979235)
chr4 (4-87)||(14602040-14602123)
chr4 (11-70)||(16012503-16012562)
chr4 (23-79)||(1723952-1724009)
chr4 (4-84)||(5518526-5518606)
chr4 (92-156)||(19818610-19818674)
chr4 (6-42)||(19643730-19643766)
chr4 (1-140)||(26894743-26894880)
[»] chr8 (18 HSPs)
chr8 (5-153)||(23269165-23269311)
chr8 (4-153)||(26916923-26917070)
chr8 (4-166)||(17927729-17927889)
chr8 (5-153)||(1909734-1909880)
chr8 (4-79)||(3459509-3459584)
chr8 (3-153)||(15057955-15058102)
chr8 (12-90)||(18322923-18323001)
chr8 (4-149)||(30477564-30477707)
chr8 (4-70)||(24677612-24677678)
chr8 (4-79)||(13754749-13754824)
chr8 (4-79)||(13764980-13765055)
chr8 (17-106)||(17319657-17319747)
chr8 (4-62)||(21416746-21416804)
chr8 (51-91)||(14666911-14666951)
chr8 (4-84)||(24576608-24576688)
chr8 (4-63)||(6928115-6928174)
chr8 (49-150)||(23497205-23497304)
chr8 (13-70)||(5859815-5859872)
[»] chr7 (19 HSPs)
chr7 (12-167)||(29373351-29373504)
chr7 (5-156)||(13159289-13159439)
chr7 (3-91)||(9573450-9573538)
chr7 (4-167)||(21161147-21161307)
chr7 (12-79)||(7486536-7486603)
chr7 (8-89)||(9135390-9135471)
chr7 (4-89)||(12644766-12644851)
chr7 (4-115)||(16987117-16987226)
chr7 (4-84)||(39879373-39879453)
chr7 (12-114)||(5863145-5863245)
chr7 (4-79)||(9867964-9868039)
chr7 (4-106)||(13292148-13292248)
chr7 (4-79)||(26762936-26763011)
chr7 (23-89)||(5925519-5925585)
chr7 (20-66)||(43172068-43172114)
chr7 (4-89)||(10287621-10287706)
chr7 (23-91)||(18773960-18774028)
chr7 (52-89)||(12265165-12265202)
chr7 (4-68)||(5929036-5929100)
[»] chr6 (29 HSPs)
chr6 (3-153)||(34187218-34187366)
chr6 (3-91)||(9277324-9277412)
chr6 (3-79)||(25008414-25008490)
chr6 (3-125)||(9292043-9292163)
chr6 (4-75)||(19730616-19730687)
chr6 (4-79)||(689882-689957)
chr6 (3-128)||(10926917-10927041)
chr6 (4-69)||(9403173-9403238)
chr6 (4-76)||(16343573-16343645)
chr6 (15-91)||(20148296-20148372)
chr6 (15-91)||(22184456-22184532)
chr6 (5-124)||(15104293-15104406)
chr6 (4-79)||(18147297-18147372)
chr6 (4-67)||(19305467-19305530)
chr6 (4-106)||(22497323-22497423)
chr6 (12-153)||(30680911-30681050)
chr6 (4-103)||(12449608-12449705)
chr6 (12-84)||(31295568-31295640)
chr6 (3-125)||(2907853-2907973)
chr6 (4-42)||(3404887-3404925)
chr6 (6-64)||(10115712-10115770)
chr6 (4-89)||(34064176-34064261)
chr6 (119-167)||(690016-690064)
chr6 (4-84)||(12424339-12424419)
chr6 (117-153)||(14080382-14080418)
chr6 (117-153)||(20148215-20148251)
chr6 (117-153)||(22184577-22184613)
chr6 (4-60)||(23768203-23768259)
chr6 (4-84)||(27860973-27861053)
[»] scaffold0505 (1 HSPs)
scaffold0505 (4-153)||(7804-7951)
[»] scaffold0205 (2 HSPs)
scaffold0205 (4-91)||(10940-11027)
scaffold0205 (4-79)||(22877-22952)
[»] scaffold0140 (1 HSPs)
scaffold0140 (4-84)||(6284-6364)
[»] scaffold0360 (1 HSPs)
scaffold0360 (4-79)||(13913-13988)
[»] chr3 (15 HSPs)
chr3 (4-67)||(17143774-17143837)
chr3 (4-167)||(2311859-2312020)
chr3 (12-107)||(21649378-21649471)
chr3 (4-79)||(12516176-12516251)
chr3 (4-107)||(14860124-14860225)
chr3 (12-153)||(28723807-28723946)
chr3 (35-79)||(8122970-8123014)
chr3 (4-84)||(9801109-9801188)
chr3 (11-106)||(12251954-12252047)
chr3 (4-71)||(21342312-21342379)
chr3 (4-67)||(30606931-30606994)
chr3 (4-42)||(28715513-28715551)
chr3 (34-79)||(9007831-9007876)
chr3 (14-79)||(12108410-12108475)
chr3 (119-156)||(28715621-28715658)
[»] scaffold0022 (1 HSPs)
scaffold0022 (3-84)||(69248-69329)
[»] scaffold0103 (1 HSPs)
scaffold0103 (12-88)||(40778-40854)
[»] scaffold0294 (1 HSPs)
scaffold0294 (4-62)||(268-326)
[»] scaffold0023 (1 HSPs)
scaffold0023 (4-82)||(95835-95913)
[»] scaffold0002 (2 HSPs)
scaffold0002 (4-104)||(379684-379782)
scaffold0002 (4-64)||(121036-121096)
[»] scaffold0005 (1 HSPs)
scaffold0005 (4-87)||(215255-215338)
[»] scaffold0054 (1 HSPs)
scaffold0054 (17-71)||(68838-68892)
[»] scaffold0291 (1 HSPs)
scaffold0291 (4-64)||(15455-15515)
[»] scaffold0092 (1 HSPs)
scaffold0092 (4-75)||(21643-21714)
[»] scaffold0074 (1 HSPs)
scaffold0074 (4-75)||(35248-35319)
[»] scaffold0380 (1 HSPs)
scaffold0380 (4-104)||(6885-6983)
[»] scaffold0174 (1 HSPs)
scaffold0174 (35-103)||(29332-29398)
[»] scaffold0013 (1 HSPs)
scaffold0013 (4-84)||(4449-4529)
[»] scaffold0012 (1 HSPs)
scaffold0012 (8-76)||(149141-149209)


Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 3 - 240
Target Start/End: Complemental strand, 8938979 - 8938742
Alignment:
Q  3 cacactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcat 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||    
T  8938979 cacactttttacacactctttctcagttccaatactgactagagcattggagtgttaacgtgcctgcatgcacctttcgttctaccgcacaaagactcat 8938880  T
Q  103 cgccaacgtaccatagcactttccgccaccattgcctctcatccatcctcatcgaacagatcaataacaaacattaagatcctgtttggattgactcgtt 202  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  8938879 cgccaccgtaccagagcactttccgccaccattgcctctcatccatcctcatcgaacatatcaataacaaacattaagatcctgtttggattgattcgtt 8938780  T
Q  203 tgagtttatctaatgtcataagatcttgtgatattatt 240  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8938779 tgagtttatctaatgtcataagatcttgtgatattatt 8938742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 165
Target Start/End: Complemental strand, 22903159 - 22903000
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatc 103  Q
    ||||||| |||||||||||||||||||||| |||||||| |||| ||| ||||||||| ||||| |    |||||| |||| ||||  |||| |||||||    
T  22903159 acactttctacacactctttctcagttccattactgacttgagcgttgaagtgctaacatgcctacgaaaacctttcgttccaccg--cgaaaactcatc 22903062  T
Q  104 gccaacgtaccatagcactttccgccaccattgcctctcatccatcctcatcgaacagatca 165  Q
     ||| |||||   |||||||||||||| | ||||||||||||||||||||||| ||||||||    
T  22903061 accaccgtactgaagcactttccgccaacgttgcctctcatccatcctcatcggacagatca 22903000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 132
Target Start/End: Complemental strand, 16621264 - 16621148
Alignment:
Q  14 cacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatcgccaacgtac 113  Q
    ||||||||||||||||||||||| || || |||| ||| |||| |||||||||| ||| ||||||| |||| ||||   |||||||||||||||| ||||    
T  16621264 cacactctttctcagttccaatattggcttgagcgttgaagtgttaacgtgcctacatacacctttcgttccaccg--tgaagactcatcgccaatgtac 16621167  T
Q  114 catagcactttccgccacc 132  Q
    || |||| |||||| ||||    
T  16621166 caaagcattttccgtcacc 16621148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 20025349 - 20025202
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatc 103  Q
    ||||||| ||||||||||||||||||| || | |||||   ||| |||||||| |||||||  ||||  ||||||| || | |||||  ||||||||||     
T  20025349 acactttctacacactctttctcagtttcattcctgacagtagcgttggagtgttaacgtgtgtgcagacacctttcgtcccaccgc--gaagactcatt 20025252  T
Q  104 gccaacgtaccatagcactttccgccaccattgcctctcatccatcctca 153  Q
    | || ||||||| ||||| ||||||||| | |||||||||||||||||||    
T  20025251 gacaccgtaccaaagcacattccgccactagtgcctctcatccatcctca 20025202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 168
Target Start/End: Original strand, 27083263 - 27083424
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatc 103  Q
    ||||||| ||||||||||||| ||||| |  |||||||| |||  |||||||||||||||| |||||  ||| ||| ||||||||||  |||||||| ||    
T  27083263 acactttctacacactctttcacagtttct-tactgacttgagtgttggagtgctaacgtgtctgcagacacatttcgttctaccgc--gaagactcttc 27083359  T
Q  104 gccaacgtaccatagcactttccgccaccattgcctctcatccatcctcatcgaacagatcaata 168  Q
    ||||  |||  | ||||| |||||||||| |||  ||||||| ||||||| || |||||||||||    
T  27083360 gccactgtaatagagcacattccgccaccgttgtttctcatcaatcctcaccggacagatcaata 27083424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 151
Target Start/End: Original strand, 19993190 - 19993335
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatc 103  Q
    |||||||  |||| |||||||||||||||| |||||||| ||| |||||| |||||| ||| ||||| | ||||||| | | ||||  ||||||||||      
T  19993190 acactttcaacacgctctttctcagttccattactgacttgagtattggactgctaatgtgtctgcaagaaccttttttcccaccg--cgaagactcaat 19993287  T
Q  104 gccaacgtaccatagcactttccgccaccattgcctctcatccatcct 151  Q
     ||  ||||||  |||||||||||||||| ||||||||| ||||||||    
T  19993288 ccctccgtaccggagcactttccgccaccgttgcctctcgtccatcct 19993335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 19846130 - 19846009
Alignment:
Q  9 ttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatcgccaa 108  Q
    |||| |||||||||||| |||||||||||||||| |||  || ||||||||| ||| ||||| |||||||| ||||  |  || | ||| |||||||||     
T  19846130 tttttcacactctttcttagttccaatactgacttgagtgttagagtgctaatgtgtctgcaggcacctttcgttc--catcatggagattcatcgccac 19846033  T
Q  109 cgtaccatagcactttccgccacc 132  Q
    ||||| | |||||||||| |||||    
T  19846032 cgtactagagcactttccaccacc 19846009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 153
Target Start/End: Complemental strand, 26163691 - 26163554
Alignment:
Q  14 cacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatcgccaacgtac 113  Q
    |||||||||||| |||| || | |||||| |||| |||||||||||| |||| ||||||||||||| |||| | | ||  ||||||| ||| ||  ||||    
T  26163691 cacactctttcttagtttcatttctgacttgagcgttggagtgctaatgtgcatgcatgcacctttcgttccatccca--aagactcgtcgtcattgtac 26163594  T
Q  114 catagcactttccgccaccattgcctctcatccatcctca 153  Q
       ||||| |||||||||  |||| |||||||||||||||    
T  26163593 gggagcacattccgccactgttgcgtctcatccatcctca 26163554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 25537463 - 25537371
Alignment:
Q  12 tacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatcgcc 106  Q
    |||||| ||||||||||||||| |||   || |||| ||||||||||||||||| |||| |||||||| |||| ||||  ||||||||| |||||    
T  25537463 tacacaatctttctcagttccattacaatcttgagcgttggagtgctaacgtgcttgcaggcacctttcgttccaccg--cgaagactcttcgcc 25537371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 132
Target Start/End: Complemental strand, 4477265 - 4477138
Alignment:
Q  3 cacactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcat 102  Q
    ||||||||| ||||| ||  ||||| || | ||||||||| |||| |||||||  ||||||||||||  ||||| || || | ||||||  |||||||||    
T  4477265 cacacttttcacacattccatctcatttaccatactgacttgagcgttggagtattaacgtgcctgcgggcacccttcgtcccaccgca--aagactcat 4477168  T
Q  103 cgccaacgtaccatagcactttccgccacc 132  Q
    ||||| ||||||  |||||||||| |||||    
T  4477167 cgccaccgtaccggagcactttccaccacc 4477138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 107
Target Start/End: Original strand, 25829015 - 25829114
Alignment:
Q  6 actttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatcgc 105  Q
    |||| ||||||||| ||||||| ||||| || |||||||||| |  || |||||||||||||| || ||| |||||||| ||||  |||||||| |||||    
T  25829015 acttcttacacactttttctcaattccattattgactagagcgtcagattgctaacgtgcctgaatacacattttgttcaaccg--cgaagacttatcgc 25829112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 22865820 - 22865747
Alignment:
Q  11 ttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttc 84  Q
    ||||||||| ||||||||||||| |||| ||| |||| |   ||||||||||| ||||||||||||||| ||||    
T  22865820 ttacacactttttctcagttccattactaacttgagcgtcaaagtgctaacgtacctgcatgcacctttcgttc 22865747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 31202467 - 31202553
Alignment:
Q  18 ctctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatcgcc 106  Q
    |||| |||||||||||||||||||| |||| | ||| ||||||||| |||| | |||| || ||||| ||||  |||||||||||||||    
T  31202467 ctctctctcagttccaatactgacttgagcgtcggaatgctaacgttcctgtaggcactttctgttccaccg--cgaagactcatcgcc 31202553  T

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Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 26348127 - 26348191
Alignment:
Q  27 agttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgca 91  Q
    ||||||| || ||||| |||| ||||||||||||||||||||||  ||||||| |||| ||||||    
T  26348127 agttccattaatgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccaccgca 26348191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 26994642 - 26994709
Alignment:
Q  15 acactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgt 82  Q
    ||||||||||||| ||||| |||||||| |||| | |||||||||||||| ||| |  ||||||||||    
T  26994642 acactctttctcaattccattactgacttgagcgtcggagtgctaacgtgtctgaagacaccttttgt 26994709  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 24647354 - 24647302
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtg 56  Q
    |||||| ||||||||||||| ||||||||| |||||| | |||| ||||||||    
T  24647354 acacttcttacacactctttttcagttccattactgaattgagcgttggagtg 24647302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 84
Target Start/End: Complemental strand, 30827088 - 30827056
Alignment:
Q  52 gagtgctaacgtgcctgcatgcaccttttgttc 84  Q
    |||||||||||||||||||||||||||| ||||    
T  30827088 gagtgctaacgtgcctgcatgcacctttcgttc 30827056  T

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Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 3 - 154
Target Start/End: Complemental strand, 45715062 - 45714913
Alignment:
Q  3 cacactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcat 102  Q
    |||||||||||||||||||||||||||| || |||||||| |||| ||||||||||||||||||||||||||||||| |||| ||  || ||||||||||    
T  45715062 cacactttttacacactctttctcagtttcattactgacttgagcgttggagtgctaacgtgcctgcatgcacctttcgttccac--caggaagactcat 45714965  T
Q  103 cgccaacgtaccatagcactttccgccaccattgcctctcatccatcctcat 154  Q
    |||||| |||||  ||||||||||||||   ||||| |||||||||||||||    
T  45714964 cgccaatgtaccggagcactttccgccattgttgccactcatccatcctcat 45714913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 168
Target Start/End: Complemental strand, 12169039 - 12168877
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactag-agcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcat 102  Q
    ||||||| |||||||||||||| ||||||| |||||||| | ||| |||||||| ||| |||||||||  ||||||| |||| ||||||  |||||| ||    
T  12169039 acactttctacacactctttcttagttccattactgacttgaagcgttggagtgttaatgtgcctgcagacacctttcgttccaccgca--aagacttat 12168942  T
Q  103 cgccaacgtaccatagcactttccgccaccattgcctctcatccatcctcatcgaacagatcaata 168  Q
    |||| | |||||  |||| ||||||||||  |||||||||||||||| ||| || ||| |||||||    
T  12168941 cgcc-aggtaccggagcattttccgccactgttgcctctcatccatcttcaccggacatatcaata 12168877  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 152
Target Start/End: Original strand, 27846544 - 27846690
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatc 103  Q
    ||||||| |||| ||| ||||||||||||| |||||||| || | |||||||||||||||||||||| |||| ||| || | || |  |||||||||||     
T  27846544 acactttctacaaactgtttctcagttccattactgacttgatcgttggagtgctaacgtgcctgcaggcacttttcgtccaactg--cgaagactcatt 27846641  T
Q  104 gccaacgtaccatagcactttccgccaccattgcctctcatccatcctc 152  Q
    |||| ||||||  | ||| ||||| |||  |||||||||||||||||||    
T  27846642 gccaccgtaccggaacacattccgtcactgttgcctctcatccatcctc 27846690  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 153
Target Start/End: Original strand, 19919091 - 19919238
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatc 103  Q
    ||||||| |||| ||||||||||| ||||| || |||||   || || |||| |||| || |||||| |||||||| |||| |||  ||||||||| |||    
T  19919091 acactttctacatactctttctcatttccattattgactttggcgttagagttctaatgttcctgcaggcacctttcgttccacc--acgaagactgatc 19919188  T
Q  104 gccaacgtaccatagcactttccgccaccattgcctctcatccatcctca 153  Q
    |||| | ||||  ||||||||| |||||||||||||||||||||| ||||    
T  19919189 gccaccataccggagcactttctgccaccattgcctctcatccattctca 19919238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 153
Target Start/End: Original strand, 45258177 - 45258324
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatc 103  Q
    |||||||  ||||| ||||||| |||| || |||| ||| |||| |||||||| |||||||||||||  || |||| |||| |||||  |||||||||||    
T  45258177 acactttcgacacattctttcttagtttcattacttacttgagctttggagtgttaacgtgcctgcagacatctttcgttccaccgc--gaagactcatc 45258274  T
Q  104 gccaacgtaccatagcactttccgccaccattgcctctcatccatcctca 153  Q
    |||| | || || |||| |||||  |||| ||||||||||||||||||||    
T  45258275 gccaccatatcaaagcattttccatcaccgttgcctctcatccatcctca 45258324  T

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Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 36022530 - 36022405
Alignment:
Q  1 ctcacactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactc 100  Q
    ||||||||||||||| |||||||||||||  ||||||||||| |||| || ||||| |||||||||| |||  |||||| |||||||   || |||||||    
T  36022530 ctcacactttttacaaactctttctcagtctcaatactgacttgagcgttagagtgttaacgtgcctacatatacctttcgttctac--tacaaagactc 36022433  T
Q  101 atcgccaacgtaccatagcactttccgc 128  Q
    || |||| |||| || || |||||||||    
T  36022432 attgccaccgtatcagagaactttccgc 36022405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 151
Target Start/End: Original strand, 12127688 - 12127833
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatc 103  Q
    ||||||| ||||||| | |||| |||| || |||||||| |||| |||||||||||||||||||||| | |||||| || | ||||  ||||||| ||||    
T  12127688 acactttctacacacacgttcttagtttcattactgacttgagcgttggagtgctaacgtgcctgcaggtacctttcgtcccaccg--cgaagacccatc 12127785  T
Q  104 gccaacgtaccatagcactttccgccaccattgcctctcatccatcct 151  Q
     ||| ||||||  |||| |||| ||||   |||||||||||| |||||    
T  12127786 accaccgtaccgaagcattttctgccaatgttgcctctcatctatcct 12127833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 3586429 - 3586354
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttt 79  Q
    ||||||| ||| |||| ||||||||||||| |||||||| |||| | ||||| |||||||||| ||||||||||||    
T  3586429 acactttctactcactttttctcagttccattactgacttgagcgtcggagtcctaacgtgccggcatgcaccttt 3586354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 130
Target Start/End: Complemental strand, 17672020 - 17671915
Alignment:
Q  23 tctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatcgccaacgtaccatagcact 122  Q
    ||||| |||| | ||||| | ||||||||||| ||||||||| |||||  ||||||| |||| |||  | |||||||||||||||  |||||| ||||||    
T  17672020 tctcatttcctacactgatttgagcattggagcgctaacgtgtctgcagacacctttcgttccacc--atgaagactcatcgccactgtaccagagcact 17671923  T
Q  123 ttccgcca 130  Q
    ||||||||    
T  17671922 ttccgcca 17671915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 20120404 - 20120328
Alignment:
Q  13 acacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccg 89  Q
    |||||||||||||||||| || |||||||| |||  | ||||||||||||||||||||  ||||||| |||| ||||    
T  20120404 acacactctttctcagtttcattactgacttgagagtcggagtgctaacgtgcctgcagacacctttcgttccaccg 20120328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 29711073 - 29710984
Alignment:
Q  15 acactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatcgcc 106  Q
    ||||||| | ||| ||||| || ||||| |||| ||||||||||||||||| ||||| |||||||||||| ||||  ||||||| |||||||    
T  29711073 acactctctttcaattccattagtgacttgagcgttggagtgctaacgtgcatgcatacaccttttgttccaccg--cgaagacgcatcgcc 29710984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 36267561 - 36267489
Alignment:
Q  7 ctttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttt 79  Q
    |||| ||||||||||||||||||| || |||||||| |||| |||||||| |||| ||| |||| ||||||||    
T  36267561 ctttctacacactctttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcaggcaccttt 36267489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 18135937 - 18135862
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttt 79  Q
    |||||| ||||||||||||||||||||||| |||| ||| |||| |  |||| ||||||||||| || ||||||||    
T  18135937 acacttcttacacactctttctcagttccattactaacttgagcgtcagagtactaacgtgcctacaggcaccttt 18135862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 24499847 - 24499796
Alignment:
Q  12 tacacactctttctcagttccaatactgactagagcattggagtgctaacgt 63  Q
    |||||||||||||||| ||||| |||||||| |||| |||||||||||||||    
T  24499847 tacacactctttctcatttccattactgacttgagcgttggagtgctaacgt 24499796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 15825220 - 15825154
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgca 70  Q
    ||||||| |||||||||||||||||||||| ||| |||| |||| |   ||||||||||||||||||    
T  15825220 acactttctacacactctttctcagttccattaccgacttgagcgtcaaagtgctaacgtgcctgca 15825154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 131
Target Start/End: Complemental strand, 17626948 - 17626842
Alignment:
Q  23 tctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatcgccaacgtaccatagcact 122  Q
    ||||| |||| | ||||| | ||||||||||| ||||||||| |||||  ||||||| |||| |||  |  ||||||||||||||  |||||| ||||||    
T  17626948 tctcatttcctacactgatttgagcattggagagctaacgtgtctgcagacacctttcgttccaccata--aagactcatcgccactgtaccaaagcact 17626851  T
Q  123 ttccgccac 131  Q
    |||||||||    
T  17626850 ttccgccac 17626842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 18770380 - 18770317
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcct 67  Q
    ||||||| |||||||||||||||| || || |||||||| |||| |  ||||||||||||||||    
T  18770380 acactttctacacactctttctcaatttcattactgacttgagcgtcagagtgctaacgtgcct 18770317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 10923191 - 10923276
Alignment:
Q  5 cactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgc 90  Q
    |||||| |||||||||||| | |||||||  ||||||| |||  | |||||| |||||||||| ||| ||||||| |||| |||||    
T  10923191 cactttctacacactctttataagttccataactgacttgagtgtcggagtgataacgtgcctacatacacctttcgttccaccgc 10923276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 12634913 - 12634832
Alignment:
Q  3 cacactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttc 84  Q
    ||||||||| ||||| ||  ||||| |||| | |||||||  ||  |||||||| |||||||||||||||||||||| ||||    
T  12634913 cacacttttcacacattccatctcatttcctacactgacttaagagttggagtgttaacgtgcctgcatgcacctttcgttc 12634832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 31013593 - 31013553
Alignment:
Q  36 actgactagagcattggagtgctaacgtgcctgcatgcacc 76  Q
    ||||||| |||||||||||||||||||||||| || |||||    
T  31013593 actgacttgagcattggagtgctaacgtgcctacaagcacc 31013553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 153
Target Start/End: Original strand, 33101532 - 33101679
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatc 103  Q
    ||||||| |||||||| ||||||||||||| ||| |||| |||| |||||||||||||||||||||||||||||||  |||||| |  ||||||||||||    
T  33101532 acactttctacacactttttctcagttccattaccgacttgagcgttggagtgctaacgtgcctgcatgcacctttcattctacag--cgaagactcatc 33101629  T
Q  104 gccaacgtaccatagcactttccgccaccattgcctctcatccatcctca 153  Q
      ||  |||||  | ||||||||||||   ||||||||||||||||||||    
T  33101630 aacactgtaccgaaacactttccgccagtgttgcctctcatccatcctca 33101679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 4 - 153
Target Start/End: Original strand, 5459734 - 5459880
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatc 103  Q
    ||||||| |||||||||||||||||| ||  |||||  | || | ||||||||||||||| ||||||||||||||| || | |||  |||||||||||||    
T  5459734 acactttctacacactctttctcagt-ccgttactgttttgaacgttggagtgctaacgtacctgcatgcacctttcgtcccacc--acgaagactcatc 5459830  T
Q  104 gccaacgtaccatagcactttccgccaccattgcctctcatccatcctca 153  Q
    |||| ||||||| ||||| |||||||| | | ||||||||||||||||||    
T  5459831 gccaccgtaccagagcacattccgccatcgtcgcctctcatccatcctca 5459880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 34273153 - 34273025
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatc 103  Q
    ||||||| |||||||||||||||||||||  |||||||| |||||||||||||||||||||| |||| | |||||| || | ||||||  ||||||| ||    
T  34273153 acactttctacacactctttctcagttccgttactgacttgagcattggagtgctaacgtgcttgcaggtacctttcgtcccaccgca--aagactcctc 34273056  T
Q  104 gccaacgtaccatagcactttccgccaccat 134  Q
    |||| ||||||  | ||||||| ||||||||    
T  34273055 gccaccgtaccgaaacactttcagccaccat 34273025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 5671836 - 5671689
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatc 103  Q
    ||||||| |||||||||||||||||||||| |||| ||| |||| ||||||||||||||||||| ||  |||||||||  || | ||  | |||||||||    
T  5671836 acactttctacacactctttctcagttccattactaacttgagcgttggagtgctaacgtgcctacaaacaccttttg--ctccagcgggcagactcatc 5671739  T
Q  104 gccaacgtaccatagcactttccgccaccattgcctctcatccatcctca 153  Q
    |||| |||| || |||| ||||| ||||  ||||||||| ||||||||||    
T  5671738 gccaccgtatcagagcattttccaccactgttgcctctcgtccatcctca 5671689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 26977804 - 26977719
Alignment:
Q  6 actttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgca 91  Q
    ||||| ||||||||||||||| |||||| |||||||| |||| |||||||||||||||||||||| |||||||| |||| ||||||    
T  26977804 actttctacacactctttctcggttccattactgacttgagcgttggagtgctaacgtgcctgcaggcacctttcgttccaccgca 26977719  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 140
Target Start/End: Original strand, 43344469 - 43344601
Alignment:
Q  5 cactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatcg 104  Q
    ||||||||||||||||||||| |||| ||||||||||| |||| || ||||||||||||  |||||  |||||||  | | ||||||  |||||||||||    
T  43344469 cactttttacacactctttct-agtttcaatactgacttgagcgttcgagtgctaacgtttctgcagacacctttcatcccaccgca--aagactcatcg 43344565  T
Q  105 ccaacgtaccatagcactttccgccaccattgcctc 140  Q
    ||| ||||||| | |||||||| | | |||||||||    
T  43344566 ccaccgtaccagaacactttccactatcattgcctc 43344601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 106
Target Start/End: Original strand, 14255055 - 14255155
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatc 103  Q
    |||||| |||||||||||||||||||| || || ||||| |||| ||||||||||| ||||| |||| ||||| || |||| ||  ||||||||||||||    
T  14255055 acacttcttacacactctttctcagtttcattaatgacttgagcgttggagtgctatcgtgcttgcaggcacccttcgttccac--cacgaagactcatc 14255152  T
Q  104 gcc 106  Q
    |||    
T  14255153 gcc 14255155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 16050461 - 16050394
Alignment:
Q  3 cacactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgca 70  Q
    |||||||| ||||||||||||||||||||||  | ||||| |||| ||||||||||||||||||||||    
T  16050461 cacactttctacacactctttctcagttccatcaatgacttgagcgttggagtgctaacgtgcctgca 16050394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 25408162 - 25408087
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttt 79  Q
    |||||| ||||||||||| | |||||| || |||||||| ||||||||||||||||||||| ||||| ||||||||    
T  25408162 acacttcttacacactctctttcagtttcattactgacttgagcattggagtgctaacgtgtctgcaggcaccttt 25408087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 107
Target Start/End: Complemental strand, 48637617 - 48637515
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatc 103  Q
    |||||| |||||  |||| | ||||||||| |||||||| |||| |  ||||||| ||||||||||| |||||||| ||||||||||| |||||||||||    
T  48637617 acacttcttacatcctctctttcagttccattactgacttgagcgtcagagtgctgacgtgcctgcaggcacctttcgttctaccgca-gaagactcatc 48637519  T
Q  104 gcca 107  Q
    ||||    
T  48637518 gcca 48637515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 12177452 - 12177366
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgc 90  Q
    ||||||| |||||||||||||||||||||| |||||||| |||  | ||||||||||||||| || | |||||||| |||| |||||    
T  12177452 acactttctacacactctttctcagttccattactgacttgagtgtcggagtgctaacgtgcatgtaggcacctttcgttccaccgc 12177366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 18246212 - 18246075
Alignment:
Q  1 ctcacactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactc 100  Q
    ||||||||||||| ||||||||||||| ||| |||||| ||| |||| |||||||| |||||||| | ||  ||||||| |||| ||||  | |||||||    
T  18246212 ctcacactttttatacactctttctcaattctaatactcacttgagcgttggagtgttaacgtgcttacagacacctttcgttccaccg--ccaagactc 18246115  T
Q  101 atcgccaacgtaccatagcactttccgccaccattgcctc 140  Q
    ||| ||| ||||||| || |  |||||||| | |||||||    
T  18246114 atcaccaccgtaccagagtatcttccgccatcgttgcctc 18246075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 106
Target Start/End: Original strand, 4601513 - 4601612
Alignment:
Q  5 cactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatcg 104  Q
    ||||| ||||||| | |||||||||| || |||||||| |||| | ||||||||||||||||||||  ||||||| |||| ||||  |||||||| ||||    
T  4601513 cacttattacacattatttctcagtttcattactgacttgagcgtcggagtgctaacgtgcctgcagtcacctttcgttccaccg--cgaagacttatcg 4601610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 22414841 - 22414734
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatc 103  Q
    ||||||| |||||||| ||| |||||| || |||||||| |||| |  ||||||||||||||||||  |||||||| |||| ||||||  ||||||||||    
T  22414841 acactttctacacactttttttcagtttcattactgacttgagcgtcagagtgctaacgtgcctgcgggcacctttcgttccaccgca--aagactcatc 22414744  T
Q  104 gccaacgtac 113  Q
    | || |||||    
T  22414743 gtcaccgtac 22414734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 107
Target Start/End: Complemental strand, 16030461 - 16030360
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatc 103  Q
    ||||||| |||||||||||  ||||||||| |||||||| ||||||| || || |||||||||||||  |||||||  ||| ||||   |||||||||||    
T  16030461 acactttctacacactcttattcagttccattactgacttgagcatttgactgataacgtgcctgcagacacctttcattccaccg--tgaagactcatc 16030364  T
Q  104 gcca 107  Q
    ||||    
T  16030363 gcca 16030360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 3590874 - 3590813
Alignment:
Q  23 tctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttc 84  Q
    ||||||||||| |||||||| || | | |||||||||| |||||||||||||||||| ||||    
T  3590874 tctcagttccattactgacttgatcgtcggagtgctaaggtgcctgcatgcacctttcgttc 3590813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 104
Target Start/End: Original strand, 23728845 - 23728942
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatc 103  Q
    |||||| ||||||||||||||||| ||||| || ||||| |||| |   | ||||||||||||||||| ||||||| |||| ||||  ||||||||||||    
T  23728845 acacttcttacacactctttctcatttccattaatgacttgagcgtcataatgctaacgtgcctgcatccacctttcgttc-accg--cgaagactcatc 23728941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 2612692 - 2612768
Alignment:
Q  8 tttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttc 84  Q
    ||||||||||||||| ||||||||||||||||||| |||| ||  | | |||||||| |||||  ||||||| ||||    
T  2612692 tttttacacactcttcctcagttccaatactgacttgagcgtttcaatactaacgtgtctgcagacacctttcgttc 2612768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 23280412 - 23280464
Alignment:
Q  112 accatagcactttccgccaccattgcctctcatccatcctcatcgaacagatc 164  Q
    |||| |||||||||||||||| ||||| ||||| |||||||| ||||||||||    
T  23280412 accagagcactttccgccaccgttgccactcattcatcctcaccgaacagatc 23280464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 153
Target Start/End: Original strand, 2141000 - 2141115
Alignment:
Q  35 tactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatcgccaacgtaccatagcactttccgccaccat 134  Q
    |||||||| |||| ||||||||||||  ||||||||| ||||||| |||||||||   ||||| ||||||| | || || | ||||| ||||| ||||||    
T  2141000 tactgacttgagcgttggagtgctaagttgcctgcatacacctttcgttctaccg--tgaagattcatcgctaccg-actagagcacattccgtcaccat 2141096  T
Q  135 tgcctctcatccatcctca 153  Q
    || || |||| ||||||||    
T  2141097 tgtctttcattcatcctca 2141115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 30732549 - 30732511
Alignment:
Q  38 tgactagagcattggagtgctaacgtgcctgcatgcacc 76  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  30732549 tgacttgagcattggagtgctaacgtgcctgcaggcacc 30732511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 23280293 - 23280365
Alignment:
Q  12 tacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttc 84  Q
    ||||||| |||||||||||||| |||||||| |||  || ||||| |||| || ||||| |||||||| ||||    
T  23280293 tacacacactttctcagttccattactgacttgagagtttgagtgataacatgtctgcaggcacctttcgttc 23280365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 52565634 - 52565566
Alignment:
Q  16 cactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttc 84  Q
    |||||||| ||||||||  |||||||| |||| |  ||||||||||||| ||||| |||||||| ||||    
T  52565634 cactctttttcagttcctttactgacttgagcgtcagagtgctaacgtgtctgcaggcacctttcgttc 52565566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 47253343 - 47253265
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgt 82  Q
    |||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||| |||||||| |||||||||||    
T  47253343 acactttttacacactctttctcagttccattactgacttgagcgttggagtgctaacatgcctgcaagcaccttttgt 47253265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 12683851 - 12683753
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatc 103  Q
    ||||||| ||||||||||||||||||| || |||| ||| |||| |||||||||||||||||||||| |||||||| |||| ||||||  ||||||||||    
T  12683851 acactttctacacactctttctcagtttcattactaacttgagcgttggagtgctaacgtgcctgcaggcacctttcgttccaccgca--aagactcatc 12683754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 166
Target Start/End: Complemental strand, 10981933 - 10981772
Alignment:
Q  3 cacactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcat 102  Q
    |||||||||||||||||||||||| |||||| |||||||| |||  ||||||||| |||||  ||||| |||||||| || | || |  |||||||||||    
T  10981933 cacactttttacacactctttctcggttccattactgacttgagtgttggagtgccaacgttgctgcaggcacctttcgtcccactg--cgaagactcat 10981836  T
Q  103 cgccaacgtaccatagcactttccgccaccattgcctctcatccatcctcatcgaacagatcaa 166  Q
    |  || |||||   ||||| |||| |||   ||||||||||||||||||||||| |||||||||    
T  10981835 catcaccgtactggagcacattccaccattgttgcctctcatccatcctcatcggacagatcaa 10981772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 19809767 - 19809621
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatc 103  Q
    ||||||| |||||||||||||| |||| || |||||||| |||| ||||||||||||| || ||||| | |||||| | || ||||  ||||||||||||    
T  19809767 acactttctacacactctttcttagtttcattactgacttgagcgttggagtgctaacatgtctgcaggaacctttcg-tcaaccg--cgaagactcatc 19809671  T
Q  104 gccaacgtaccatagcactttccgccaccattgcctctcatccatcctca 153  Q
    | || ||||||| ||||| |||| ||||| |||||| | |||||||||||    
T  19809670 gtcaccgtaccagagcacattccaccaccgttgccttttatccatcctca 19809621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 15514586 - 15514672
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgc 90  Q
    |||||| ||||||||||||| ||||||||| |||||||| |||| ||||||||||||||||||| || ||||| || |||| |||||    
T  15514586 acacttcttacacactctttttcagttccattactgacttgagcgttggagtgctaacgtgcctacaggcacccttcgttccaccgc 15514672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 155
Target Start/End: Complemental strand, 3982002 - 3981867
Alignment:
Q  16 cactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatcgccaacgtacca 115  Q
    |||||||| ||||||||| ||  |||| |||  ||||||||||||||||| ||||||||||||| |||| ||||   |||||||||||  ||  |||||     
T  3982002 cactctttttcagttccatta--gacttgagtgttggagtgctaacgtgcatgcatgcacctttcgttccaccgt--gaagactcatcctcactgtaccg 3981907  T
Q  116 tagcactttccgccaccattgcctctcatccatcctcatc 155  Q
     | || ||||||||||| ||||||||||||||||||||||    
T  3981906 gaacattttccgccaccgttgcctctcatccatcctcatc 3981867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 29157160 - 29157081
Alignment:
Q  12 tacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgca 91  Q
    |||||||| ||||||||||||| |||| ||| |||| ||||||||| |||||| |||||||||||||| |||| ||||||    
T  29157160 tacacactttttctcagttccattactaacttgagcgttggagtgcaaacgtgtctgcatgcacctttcgttccaccgca 29157081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 13171134 - 13171064
Alignment:
Q  15 acactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttct 85  Q
    |||||||| |||||||||| |||||||| |||  |||||||||||||||||||||| |||||||| |||||    
T  13171134 acactcttgctcagttccattactgacttgagagttggagtgctaacgtgcctgcaagcacctttcgttct 13171064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 104
Target Start/End: Original strand, 15742178 - 15742276
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatc 103  Q
    |||||| ||||||||| ||||||||||||| |||||||| |||| |  ||||||||||||||| ||| |||||||| | || ||  ||||||||||||||    
T  15742178 acacttcttacacactttttctcagttccattactgacttgagcgtaagagtgctaacgtgccagcaggcacctttcgctccac--cacgaagactcatc 15742275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 156
Target Start/End: Original strand, 40979169 - 40979235
Alignment:
Q  90 cacgaagactcatcgccaacgtaccatagcactttccgccaccattgcctctcatccatcctcatcg 156  Q
    |||| ||||||||| ||| | ||||| |||||||||| | |||||||||||||||||||||||||||    
T  40979169 cacggagactcatcaccaccataccagagcactttccactaccattgcctctcatccatcctcatcg 40979235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 14602040 - 14602123
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctac 87  Q
    |||||| ||||||||||| | |||||| || |||||||| |||| ||||| ||||||||||||||||  || |||| |||||||    
T  14602040 acacttcttacacactctctttcagtttcattactgacttgagcgttggattgctaacgtgcctgcagacaactttcgttctac 14602123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 16012503 - 16012562
Alignment:
Q  11 ttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgca 70  Q
    ||||||||||| ||||||||||| |||||||| |||| | |||||| |||||||||||||    
T  16012503 ttacacactctatctcagttccattactgacttgagcgtcggagtgttaacgtgcctgca 16012562  T

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Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 1724009 - 1723952
Alignment:
Q  23 tctcagttccaatactgactagagcattggagtgctaacg-tgcctgcatgcaccttt 79  Q
    ||||| |||| ||||||||| ||||||||||||||||||| || ||||||||||||||    
T  1724009 tctcatttcctatactgacttgagcattggagtgctaacgttgtctgcatgcaccttt 1723952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 5518606 - 5518526
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttc 84  Q
    |||||| ||||||| ||| ||||||||| | |||||||| |||| ||| |||||||||||| |||||  ||||||| ||||    
T  5518606 acacttcttacacattctctctcagttcaattactgacttgagcgttgaagtgctaacgtgtctgcactcacctttcgttc 5518526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 156
Target Start/End: Complemental strand, 19818674 - 19818610
Alignment:
Q  92 cgaagactcatcgccaacgtaccatagcactttccgccaccattgcctctcatccatcctcatcg 156  Q
    ||||||||||||| || ||||||| ||||| |||| ||||| |||||| | ||||||||||||||    
T  19818674 cgaagactcatcgtcaccgtaccagagcacattccaccaccgttgccttttatccatcctcatcg 19818610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 19643766 - 19643730
Alignment:
Q  6 actttttacacactctttctcagttccaatactgact 42  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  19643766 actttctacacactctttctcagttccattactgact 19643730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 26894743 - 26894880
Alignment:
Q  1 ctcacactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactc 100  Q
    ||||||||||||| |||||| |||||| |||| | ||||||| |||| |  ||| || ||| ||| ||||||||||||| || | ||  || ||||||||    
T  26894743 ctcacactttttaaacactccttctcatttcctaaactgacttgagcgtcagagagccaacatgcatgcatgcacctttcgtcccac--catgaagactc 26894840  T
Q  101 atcgccaacgtaccatagcactttccgccaccattgcctc 140  Q
      ||||| ||||||  ||||||||||| || | |||||||    
T  26894841 gccgccaccgtaccgaagcactttccgacatcgttgcctc 26894880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 153
Target Start/End: Complemental strand, 23269311 - 23269165
Alignment:
Q  5 cactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatcg 104  Q
    |||||| |||||||||||| ||||||||| ||||||||  ||  ||||||||||||| |||||| |  ||||||| |||| ||||||  |||||||||||    
T  23269311 cactttctacacactctttatcagttccattactgacttaagtgttggagtgctaacttgcctgtagacacctttcgttccaccgca--aagactcatcg 23269214  T
Q  105 ccaacgtaccatagcactttccgccaccattgcctctcatccatcctca 153  Q
    ||| ||||||| |||| ||||||| || ||||||||| |||||| ||||    
T  23269213 ccaccgtaccagagcattttccgcaactattgcctcttatccatactca 23269165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 153
Target Start/End: Original strand, 26916923 - 26917070
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatc 103  Q
    ||||||| |||||||||| ||||||||||| |||||||| |||| || | | ||||||||||||  |||||||||| ||||  |  ||||||||||| ||    
T  26916923 acactttctacacactctctctcagttccattactgacttgagcgttagtgcgctaacgtgcctaaatgcacctttcgttc--catcacgaagactcgtc 26917020  T
Q  104 gccaacgtaccatagcactttccgccaccattgcctctcatccatcctca 153  Q
    ||||  |||| | ||| ||||| |||||| ||||||||||||||||||||    
T  26917021 gccactgtactagagccctttctgccaccgttgcctctcatccatcctca 26917070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 166
Target Start/End: Original strand, 17927729 - 17927889
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatc 103  Q
    ||||||| |||| ||||  ||||||||||| ||||||||  ||| ||||||||||||||||| ||||||||||||| || | ||  ||| |||| |||||    
T  17927729 acactttctacatactcaatctcagttccattactgacttaagcgttggagtgctaacgtgcatgcatgcacctttcgtcccac--cacaaagagtcatc 17927826  T
Q  104 gccaacgtaccatagcactttccgccaccattgcctctcatccatcctcatcgaacagatcaa 166  Q
    |||| | ||| | | |||||||||||| |  ||||||| ||||||||||| |  |||||||||    
T  17927827 gccaccatactagaacactttccgccatcgctgcctctaatccatcctcaccagacagatcaa 17927889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 153
Target Start/End: Original strand, 1909734 - 1909880
Alignment:
Q  5 cactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatcg 104  Q
    ||||||| |||||||||||||||||| || ||||||||  ||| ||| | |||||||||| |||||||||||||| |||| || |||  ||||||| |      
T  1909734 cacttttcacacactctttctcagtttcattactgactttagcgttgaaatgctaacgtgtctgcatgcacctttcgttccactgca--aagactcgtta 1909831  T
Q  105 ccaacgtaccatagcactttccgccaccattgcctctcatccatcctca 153  Q
    ||| ||||||| | |||| ||| | ||||||| |||||||| |||||||    
T  1909832 ccaccgtaccagatcactctcctcgaccattggctctcatctatcctca 1909880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 3459509 - 3459584
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttt 79  Q
    ||||||| ||||||||||| |||||||||| |||||||| ||||   |||||||||||||||||||| ||||||||    
T  3459509 acactttctacacactcttgctcagttccattactgacttgagcgccggagtgctaacgtgcctgcaggcaccttt 3459584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 153
Target Start/End: Complemental strand, 15058102 - 15057955
Alignment:
Q  3 cacactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcat 102  Q
    |||||||| |||||| | ||||||| || || |||| ||| | || ||| ||||||||||||||||||||||||||| |||| ||  ||| |||||||||    
T  15058102 cacactttctacacattttttctcaatttcattactaacttgtgcgttgtagtgctaacgtgcctgcatgcacctttcgttccac--cacaaagactcat 15058005  T
Q  103 cgccaacgtaccatagcactttccgccaccattgcctctcatccatcctca 153  Q
    || || |||||   | ||||||||| |||  ||||||||||||||||||||    
T  15058004 cgtcaccgtactgga-cactttccgtcactgttgcctctcatccatcctca 15057955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 18323001 - 18322923
Alignment:
Q  12 tacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgc 90  Q
    |||||| ||||||||||||| | |||||||| |||| |||||||| |||| || ||||||||||||||||||| |||||    
T  18323001 tacacaatctttctcagttctattactgacttgagcgttggagtgttaacatgtctgcatgcaccttttgttccaccgc 18322923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 149
Target Start/End: Complemental strand, 30477707 - 30477564
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatc 103  Q
    ||||||| ||||||||||||||||||| |  |||||||| |||| ||||||||||||||||| ||||  || |||| ||   ||||  ||||| |||||     
T  30477707 acactttctacacactctttctcagtttcgttactgacttgagcgttggagtgctaacgtgcatgcagacatctttcgtctcaccg--cgaagtctcatt 30477610  T
Q  104 gccaacgtaccatagcactttccgccaccattgcctctcatccatc 149  Q
    |||| | |||   |||||||||||||||  ||||||||||||||||    
T  30477609 gccaccatactggagcactttccgccactgttgcctctcatccatc 30477564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 24677612 - 24677678
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgca 70  Q
    |||||| ||||||  ||| |||||||||||||||||||| |||||||||||||||||| ||| ||||    
T  24677612 acacttcttacactttctctctcagttccaatactgacttgagcattggagtgctaacatgcttgca 24677678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 13754824 - 13754749
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttt 79  Q
    ||||||| ||||||||||||||||||| || |||||||| ||||  || |||| ||||||||| ||| ||||||||    
T  13754824 acactttctacacactctttctcagtttcattactgacttgagcgatgtagtgttaacgtgccagcaggcaccttt 13754749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 13765055 - 13764980
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttt 79  Q
    ||||||| ||||||||||||||||||| || |||| ||| || |||||||||  |||||||||||||  |||||||    
T  13765055 acactttctacacactctttctcagtttcattactcacttgaacattggagtcttaacgtgcctgcagacaccttt 13764980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 17319657 - 17319747
Alignment:
Q  17 actctttctcagttccaatactgactagagcattggag---tgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatcgcc 106  Q
    ||||||||||||||||| |||||||| || |||  |||   ||||||| ||||||||||||||||| |||| ||  |||||||||||||||||    
T  17319657 actctttctcagttccattactgacttgaacatcagagtgctgctaacatgcctgcatgcacctttcgttccac--cacgaagactcatcgcc 17319747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 21416804 - 21416746
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacg 62  Q
    ||||||| ||||||||||||||||||| || |||||||| |||| | ||||||||||||    
T  21416804 acactttctacacactctttctcagtttcattactgacttgagcgtcggagtgctaacg 21416746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 14666911 - 14666951
Alignment:
Q  51 ggagtgctaacgtgcctgcatgcaccttttgttctaccgca 91  Q
    |||||||||||||||||||| ||||||||||||| ||||||    
T  14666911 ggagtgctaacgtgcctgcaggcaccttttgttccaccgca 14666951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 24576608 - 24576688
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttc 84  Q
    |||||| |||||||||| || | ||||||| |||||||| |||| |  ||||| ||||||||||||| |||||||| ||||    
T  24576608 acacttcttacacactcatttttagttccattactgacttgagcgtcagagtgttaacgtgcctgcaggcacctttcgttc 24576688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 6928115 - 6928174
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgt 63  Q
    ||||||| |||||||||||||||||||||| |||||||| |||  ||| | |||||||||    
T  6928115 acactttctacacactctttctcagttccattactgacttgagtgttgaaatgctaacgt 6928174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 150
Target Start/End: Original strand, 23497205 - 23497304
Alignment:
Q  49 ttggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatcgccaacgtaccatagcactttccgccaccattgcctctcatccat 148  Q
    ||||||||||||| ||| ||||   |||||| |||| || |||  |||||||||||||| ||||||  || | ||||||||||  |||||||||||||||    
T  23497205 ttggagtgctaacatgcgtgcagatacctttcgttccactgca--aagactcatcgccaccgtacctgagtattttccgccactgttgcctctcatccat 23497302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 5859872 - 5859815
Alignment:
Q  13 acacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgca 70  Q
    ||||||| ||||| ||||||| || ||||| |||| |||||||||||||||| |||||    
T  5859872 acacactatttcttagttccattattgacttgagcgttggagtgctaacgtgtctgca 5859815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 12 - 167
Target Start/End: Complemental strand, 29373504 - 29373351
Alignment:
Q  12 tacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatcgccaacgt 111  Q
    |||||||||||||||| || ||  ||||||| |||||||||||| ||||| ||||||||||||||||| |||  ||||||  || ||||||| ||| |||    
T  29373504 tacacactctttctcaattacacaactgacttgagcattggagtcctaacatgcctgcatgcacctttcgtttcaccgca--aaaactcatcaccaccgt 29373407  T
Q  112 accatagcactttccgccaccattgcctctcatccatcctcatcgaacagatcaat 167  Q
    |||| | || ||||| |||| ||||||||||||| |||||||  | ||||||||||    
T  29373406 accagaacattttccaccactattgcctctcatctatcctcactggacagatcaat 29373351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 156
Target Start/End: Complemental strand, 13159439 - 13159289
Alignment:
Q  5 cactttttacacactctt-tctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatc 103  Q
    |||||||||||||||||| ||| |||||||||||||| | ||||||||||||| ||||||||||||| |||| |||||| |  |||||  |||||||| |    
T  13159439 cactttttacacactcttctcttagttccaatactgatttgagcattggagtgttaacgtgcctgcaggcacattttgtcccgccgca--aagactcaac 13159342  T
Q  104 gccaacgtaccatagcactttccgccaccattgcctctcatccatcctcatcg 156  Q
    |||  |||||   ||||  |||  ||||| |||||||||||||||||||||||    
T  13159341 gccgccgtactggagcatcttctcccaccgttgcctctcatccatcctcatcg 13159289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 9573450 - 9573538
Alignment:
Q  3 cacactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgca 91  Q
    ||||||| |||||||||||||||||||||| ||| ||||| | || |||||||||||||||||||||| |||||  |||||| ||||||    
T  9573450 cacacttcttacacactctttctcagttcccatattgacttgtgcgttggagtgctaacgtgcctgcaggcaccccttgttccaccgca 9573538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 167
Target Start/End: Complemental strand, 21161307 - 21161147
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatc 103  Q
    ||||||| ||||||| |||||| || |||| |||||||| |||| ||||||||||||||||||||||  || |||| |||| ||||  ||||||||||||    
T  21161307 acactttctacacacactttcttagctccattactgacttgagcgttggagtgctaacgtgcctgcagaca-ctttcgttccaccg--cgaagactcatc 21161211  T
Q  104 gccaacgtaccatagcactttccgccaccattgcctctcatccatcctcatcgaacagatcaat 167  Q
      |  ||| ||| ||||  ||| |||| ||||||||||||||||||||||  | ||||||||||    
T  21161210 ttccccgttccagagcatattctgccaacattgcctctcatccatcctcactggacagatcaat 21161147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 7486603 - 7486536
Alignment:
Q  12 tacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttt 79  Q
    |||||| ||||||||||||||| |||||| | |||| |||||||||||||||||||||||||||||||    
T  7486603 tacacaatctttctcagttccattactgaattgagcgttggagtgctaacgtgcctgcatgcaccttt 7486536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 9135390 - 9135471
Alignment:
Q  8 tttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccg 89  Q
    |||||||||||||||||||| ||||| |||||||| |||| || ||||||||||||||||  |||||||||| |||| ||||    
T  9135390 tttttacacactctttctcaattccattactgacttgagcgttagagtgctaacgtgcctatatgcacctttcgttccaccg 9135471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 12644851 - 12644766
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccg 89  Q
    |||||||  ||||||| ||||||||||||| |||||||  |||| | ||||||||||| ||||||||||||||||| |||| ||||    
T  12644851 acactttccacacactttttctcagttccattactgacctgagcgtcggagtgctaacttgcctgcatgcacctttcgttccaccg 12644766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 16987117 - 16987226
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatc 103  Q
    |||||| ||||||||||||||||| ||||| ||||| || |||  |  ||||||||||||||| |||||||||||| |||| ||||  |||||||||||     
T  16987117 acacttcttacacactctttctcaattccattactggcttgagtgtcagagtgctaacgtgcccgcatgcacctttcgttccaccg--cgaagactcatt 16987214  T
Q  104 gccaacgtacca 115  Q
    |||  |||||||    
T  16987215 gccgccgtacca 16987226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 39879453 - 39879373
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttc 84  Q
    ||||||||||||||||||||||||||| || |||||||| |||| ||  |||| ||||||| ||||| |||||||| ||||    
T  39879453 acactttttacacactctttctcagtttcattactgacttgagcgttaaagtgttaacgtgtctgcaggcacctttcgttc 39879373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 5863245 - 5863145
Alignment:
Q  12 tacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatcgccaacgt 111  Q
    |||||||||||||||||||| | |||||||| |||| || |||||||||||||| |||| |||  ||| |||||||||   ||||||||||||| | |||    
T  5863245 tacacactctttctcagttcgattactgacttgagcgtttgagtgctaacgtgcttgcacgcaaatttcgttctaccg--tgaagactcatcgctaccgt 5863148  T
Q  112 acc 114  Q
    |||    
T  5863147 acc 5863145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 9867964 - 9868039
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttt 79  Q
    ||||||| |||| |||||| |||||||||| |||||||| |||| |  |||||||||||| |||||||||||||||    
T  9867964 acactttctacaaactcttcctcagttccattactgacttgagcgtcagagtgctaacgttcctgcatgcaccttt 9868039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 106
Target Start/End: Original strand, 13292148 - 13292248
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatc 103  Q
    |||||| ||||||||||||| |||||| || |||||||| |||| || |||||||||||| ||||||  |||||||  ||| ||  ||||||||||||||    
T  13292148 acacttcttacacactctttttcagtttcattactgacttgagcgttagagtgctaacgtacctgcagacacctttccttccac--cacgaagactcatc 13292245  T
Q  104 gcc 106  Q
    |||    
T  13292246 gcc 13292248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 26762936 - 26763011
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttt 79  Q
    ||||||| |||||||| ||| | ||||||  |||||||| |||| |||||||||||||||||||||| | ||||||    
T  26762936 acactttctacacactatttatgagttcctttactgacttgagcgttggagtgctaacgtgcctgcaagaaccttt 26763011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 5925519 - 5925585
Alignment:
Q  23 tctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccg 89  Q
    ||||||||||| |||||||| || | ||||||||||||||||||||||  ||||||| |||| ||||    
T  5925519 tctcagttccattactgacttgatcgttggagtgctaacgtgcctgcagacacctttcgttccaccg 5925585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 43172068 - 43172114
Alignment:
Q  20 ctttctcagttccaatactgactagagcattggagtgctaacgtgcc 66  Q
    |||||||||||||| || ||||| |||||||||||||||||||||||    
T  43172068 ctttctcagttccattattgacttgagcattggagtgctaacgtgcc 43172114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 89
Target Start/End: Original strand, 10287621 - 10287706
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccg 89  Q
    |||||| ||||||||| |||||||| |||| |||||||| |||| ||   ||||||||||||||||| | |||||| |||| ||||    
T  10287621 acacttcttacacactttttctcagatccattactgacttgagcgttaaggtgctaacgtgcctgcaggaacctttggttccaccg 10287706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 18774028 - 18773960
Alignment:
Q  23 tctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgca 91  Q
    ||||||||||| |||||| | || | | | ||||||||||||||||||||||||||| |||| ||||||    
T  18774028 tctcagttccattactgatttgatcgtcgaagtgctaacgtgcctgcatgcacctttcgttccaccgca 18773960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 89
Target Start/End: Original strand, 12265165 - 12265202
Alignment:
Q  52 gagtgctaacgtgcctgcatgcaccttttgttctaccg 89  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  12265165 gagtgttaacgtgcctgcatgcaccttttgttccaccg 12265202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 5929036 - 5929100
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctg 68  Q
    |||||| |||||| |||| | ||||||||| |||||||| |||  |||||||||||| |||||||    
T  5929036 acacttcttacactctctctttcagttccattactgacttgagtgttggagtgctaatgtgcctg 5929100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 153
Target Start/End: Complemental strand, 34187366 - 34187218
Alignment:
Q  3 cacactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcat 102  Q
    ||||||||||||||||||||||||||||||| |||||||| |||  |||| ||||||||||| |||||  ||||||| |||| ||||||  |||||| ||    
T  34187366 cacactttttacacactctttctcagttccattactgacttgagtgttggtgtgctaacgtgtctgcagacacctttcgttccaccgca--aagacttat 34187269  T
Q  103 cgccaacgtaccatagcactttccgccaccattgcctctcatccatcctca 153  Q
    | |||  ||| |  | ||||||||||| || ||||||||||| ||||||||    
T  34187268 caccactgtagcggaacactttccgccgccgttgcctctcattcatcctca 34187218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 9277324 - 9277412
Alignment:
Q  3 cacactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgca 91  Q
    ||||||||||||| |||||||||||||||||||||||||| |||| ||  |||||||||||| ||||| | |||||| |||| ||||||    
T  9277324 cacactttttacatactctttctcagttccaatactgacttgagcgttatagtgctaacgtgtctgcaggaacctttcgttccaccgca 9277412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 25008414 - 25008490
Alignment:
Q  3 cacactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttt 79  Q
    ||||||||||||||||||||||||| ||||| |||||||| |||| |||||||| |||||||||  |||||||||||    
T  25008414 cacactttttacacactctttctcaattccattactgacttgagcgttggagtgttaacgtgccgacatgcaccttt 25008490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 125
Target Start/End: Original strand, 9292043 - 9292163
Alignment:
Q  3 cacactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcat 102  Q
    ||||||||||||| ||| |||||||||||||||||||||| |||| || | |||||||||||| |||| |||||||| |||| |||| |  ||||||| |    
T  9292043 cacactttttacatactatttctcagttccaatactgacttgagcgttagcgtgctaacgtgcttgcaggcacctttcgttccaccgta--aagactcct 9292140  T
Q  103 cgccaacgtaccatagcactttc 125  Q
    | ||| |||| || |||||||||    
T  9292141 caccaccgtagcagagcactttc 9292163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 19730616 - 19730687
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcac 75  Q
    |||||| ||||||||||||||||||||||| || ||||| |||| ||||||||||||| |||||||||||||    
T  19730616 acacttcttacacactctttctcagttccattattgacttgagcgttggagtgctaacatgcctgcatgcac 19730687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 689882 - 689957
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttt 79  Q
    ||||||| ||||||| |||||||||||||| |||||||| |||||||| |||||||| || ||||||  |||||||    
T  689882 acactttatacacacactttctcagttccattactgacttgagcattgcagtgctaatgtacctgcaaacaccttt 689957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 128
Target Start/End: Original strand, 10926917 - 10927041
Alignment:
Q  3 cacactttttacacactcttt-ctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactca 101  Q
    |||||||||||| |||||||| ||||||||||||||||| | | || |||  ||||||||||| ||||||| |||||| ||   ||||||  |||||||     
T  10926917 cacactttttacgcactcttttctcagttccaatactgaattgggcgttgaggtgctaacgtgtctgcatgaacctttcgtctcaccgca--aagactcg 10927014  T
Q  102 tcgccaacgtaccatagcactttccgc 128  Q
    |||||| ||||||| | ||||||||||    
T  10927015 tcgccaccgtaccagatcactttccgc 10927041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 9403238 - 9403173
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgc 69  Q
    |||||| ||||||||||||||||||||||| || ||||| |||| | ||||| |||||||||||||    
T  9403238 acacttcttacacactctttctcagttccattattgacttgagcgtcggagttctaacgtgcctgc 9403173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 16343645 - 16343573
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcacc 76  Q
    |||||| ||||||  ||| ||||||||||| |||||||| |||  |||||||||||||||||||||| |||||    
T  16343645 acacttcttacactttctctctcagttccattactgacttgagtgttggagtgctaacgtgcctgcaggcacc 16343573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 20148372 - 20148296
Alignment:
Q  15 acactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgca 91  Q
    ||||||||||||| ||||| |||| ||| ||||  ||||||||||||||| |||||||||| ||| |||| ||||||    
T  20148372 acactctttctcaattccattactaacttgagcgatggagtgctaacgtgtctgcatgcacttttcgttccaccgca 20148296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 22184456 - 22184532
Alignment:
Q  15 acactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgca 91  Q
    ||||||||||||| ||||| |||| ||| ||||  ||||||||||||||| |||||||||| ||| |||| ||||||    
T  22184456 acactctttctcaattccattactaacttgagcgatggagtgctaacgtgtctgcatgcacttttcgttccaccgca 22184532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 15104293 - 15104406
Alignment:
Q  5 cactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatcg 104  Q
    |||||||||||||| |||||||  || | ||||||||| |||| |||||||    | |||||||||  ||||||| |||||||||  ||||||||||||     
T  15104293 cactttttacacaccctttctcgttttctatactgacttgagcgttggagt----atgtgcctgcagacacctttcgttctaccg--cgaagactcatcc 15104386  T
Q  105 ccaacgtaccatagcacttt 124  Q
    ||| ||||||| ||||||||    
T  15104387 ccaccgtaccagagcacttt 15104406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 18147372 - 18147297
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttt 79  Q
    ||||||| ||||||||||||||| |||||| || ||||| |||| |||||||| |||||| ||| || ||||||||    
T  18147372 acactttctacacactctttctcggttccattagtgacttgagcgttggagtgttaacgttcctacaggcaccttt 18147297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 19305530 - 19305467
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcct 67  Q
    ||||||| ||||||||||| |||||||||| |||||||| |||| ||  |||||||||||||||    
T  19305530 acactttctacacactcttactcagttccattactgacttgagcgtttaagtgctaacgtgcct 19305467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 106
Target Start/End: Original strand, 22497323 - 22497423
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatc 103  Q
    |||||||||| || |||| | || |||||| |||||||| |||| | |||||||||||||| ||||| |||||||| |||| | ||  ||||||||||||    
T  22497323 acactttttatactctctctttctgttccattactgacttgagcgtcggagtgctaacgtgtctgcaagcacctttcgttccatcg--cgaagactcatc 22497420  T
Q  104 gcc 106  Q
    |||    
T  22497421 gcc 22497423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 153
Target Start/End: Complemental strand, 30681050 - 30680911
Alignment:
Q  12 tacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatcgccaacgt 111  Q
    ||||| |||||| |||||| || |||||||| |||| ||||||||||||||||  ||||  ||||||| || | ||||  |||||||||||| ||| | |    
T  30681050 tacacgctctttatcagtttcattactgacttgagcgttggagtgctaacgtgattgcagacacctttcgtcccaccg--cgaagactcatctccacctt 30680953  T
Q  112 accatagcactttccgccaccattgcctctcatccatcctca 153  Q
    |||  ||||| | |||||||| |||  ||| |||||||||||    
T  30680952 accggagcacctcccgccaccgttgtttcttatccatcctca 30680911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 12449608 - 12449705
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatc 103  Q
    |||||| ||||||||||||| |||| |||| |||||||| |||| |  |||||||||||||||| ||  ||||||| || | ||  ||||||||||||||    
T  12449608 acacttcttacacactctttttcagctccattactgacttgagcgtcagagtgctaacgtgcctacagacacctttcgtcccac--cacgaagactcatc 12449705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 31295568 - 31295640
Alignment:
Q  12 tacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttc 84  Q
    ||||||||||||||||||| || |||||||| |||| | | ||||||||| |||||||| ||| |||| ||||    
T  31295568 tacacactctttctcagtttcattactgacttgagcgtcgaagtgctaacatgcctgcaggcaactttcgttc 31295640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 125
Target Start/End: Complemental strand, 2907973 - 2907853
Alignment:
Q  3 cacactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcat 102  Q
    ||||| |||| ||||| |||||||| |||||||| ||| | |||| || | ||||||||||| |||||  ||||||| ||| |||||  |||| |||| |    
T  2907973 cacacgttttgcacaccctttctcaattccaataatgatttgagcgttagcgtgctaacgtgactgcagacacctttcgttttaccg--cgaaaactcgt 2907876  T
Q  103 cgccaacgtaccatagcactttc 125  Q
    || || ||||| |||||||||||    
T  2907875 cgacaccgtactatagcactttc 2907853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 3404887 - 3404925
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgact 42  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  3404887 acactttctacacactctttctcagttccattactgact 3404925  T

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Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 10115712 - 10115770
Alignment:
Q  6 actttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtg 64  Q
    ||||||||| | ||||||||||||| || |||||||| ||||||||| | |||||||||    
T  10115712 actttttactcgctctttctcagtttcattactgacttgagcattggggagctaacgtg 10115770  T

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Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 34064261 - 34064176
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccg 89  Q
    |||||| ||||||||||||||| |||| || |||||||| || | |   |||| |||||||||||||  ||||||| |||||||||    
T  34064261 acacttcttacacactctttcttagtttcattactgacttgaacgtcatagtgttaacgtgcctgcacacacctttcgttctaccg 34064176  T

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Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 690016 - 690064
Alignment:
Q  119 cactttccgccaccattgcctctcatccatcctcatcgaacagatcaat 167  Q
    |||||||  |||||||| || |||||||||||||| |||||||||||||    
T  690016 cactttctaccaccattaccactcatccatcctcaccgaacagatcaat 690064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 12424339 - 12424419
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttc 84  Q
    |||||||||| ||  ||| ||||||||||| |||||||| ||   | | |||||||||||||||||| |||||||| ||||    
T  12424339 acactttttagactttctctctcagttccattactgacttgattgtcgtagtgctaacgtgcctgcaggcacctttcgttc 12424419  T

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Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 153
Target Start/End: Complemental strand, 14080418 - 14080382
Alignment:
Q  117 agcactttccgccaccattgcctctcatccatcctca 153  Q
    |||||||||||||||||||| | ||||||||||||||    
T  14080418 agcactttccgccaccattgtcactcatccatcctca 14080382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 153
Target Start/End: Complemental strand, 20148251 - 20148215
Alignment:
Q  117 agcactttccgccaccattgcctctcatccatcctca 153  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  20148251 agcactttccgccatcattgccactcatccatcctca 20148215  T

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Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 153
Target Start/End: Original strand, 22184577 - 22184613
Alignment:
Q  117 agcactttccgccaccattgcctctcatccatcctca 153  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  22184577 agcactttccgccatcattgccactcatccatcctca 22184613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 23768259 - 23768203
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaa 60  Q
    |||||| ||||||||| | | ||||||| | |||||||| |||||||||||||||||    
T  23768259 acacttcttacacactatctttcagttcaattactgacttgagcattggagtgctaa 23768203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 27860973 - 27861053
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttc 84  Q
    |||||| |||||| |||| | ||||||||| |||||||| |||  || |||| ||||| ||||||||  ||||||||||||    
T  27860973 acacttcttacactctctctttcagttccattactgacttgagtgttagagtactaacatgcctgcagacaccttttgttc 27861053  T

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Target: scaffold0505 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 7951 - 7804
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatc 103  Q
    ||||||| |||||||||||||||| || || |||||| | |||| || |||||||||||||||| |||||||||||  ||| ||||   |||||||||||    
T  7951 acactttctacacactctttctcaattgcattactgatttgagcgttagagtgctaacgtgcctacatgcacctttccttccaccg--tgaagactcatc 7854  T
Q  104 gccaacgtaccatagcactttccgccaccattgcctctcatccatcctca 153  Q
    |||| ||||  | || ||||| ||||||  ||||||||||||||||||||    
T  7853 gccaccgtaatagagtacttttcgccacttttgcctctcatccatcctca 7804  T

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Target: scaffold0205 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 10940 - 11027
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgca 91  Q
    |||||| ||||||||||| | ||||||||| || ||||| |||| ||||||||||||||||||||||| |||||||||||| ||||||    
T  10940 acacttcttacacactctctttcagttccattattgacttgagcgttggagtgctaacgtgcctgcatacaccttttgttccaccgca 11027  T

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Target: scaffold0205; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 22952 - 22877
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttt 79  Q
    |||||| ||||||||  ||||||||||||| |||||||| |||| |  ||||||||||||||| ||| ||||||||    
T  22952 acacttcttacacacgatttctcagttccattactgacttgagcgtcagagtgctaacgtgcccgcaggcaccttt 22877  T

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Target: scaffold0140 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 6364 - 6284
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttc 84  Q
    ||||||| |||||||| ||||||||||||| |||||||| |||| | | ||||||||||||||||||  ||||||||||||    
T  6364 acactttctacacactatttctcagttccattactgacttgagcttcgaagtgctaacgtgcctgcaaacaccttttgttc 6284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 13988 - 13913
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttt 79  Q
    ||||||| ||||||||||||||||||| || |||||||| |||| ||||||| ||||||||| | |||||||||||    
T  13988 acactttctacacactctttctcagtttcattactgacttgagctttggagtactaacgtgcattcatgcaccttt 13913  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 17143774 - 17143837
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcct 67  Q
    ||||||| |||||||||||||||||||||| |||||||| |||| | |||||||||||||||||    
T  17143774 acactttctacacactctttctcagttccattactgacttgagcgtcggagtgctaacgtgcct 17143837  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 167
Target Start/End: Original strand, 2311859 - 2312020
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatc 103  Q
    ||||||| |||||| |||||||||  |||  | |||| | |||| |||||||||||||||  |||||  |||||||  ||| |||  |||||||||| ||    
T  2311859 acactttctacacattctttctcaaatcccttgctgatttgagcgttggagtgctaacgtatctgcagacacctttcattccacc--acgaagactcttc 2311956  T
Q  104 gccaacgtaccatagcactttccgccaccattgcctctcatccatcctcatcgaacagatcaat 167  Q
    |||| ||||||  |||||||| ||||||  ||||||||||||||| |||| || ||| ||||||    
T  2311957 gccaccgtaccggagcactttgcgccactgttgcctctcatccatactcaccggacatatcaat 2312020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 21649471 - 21649378
Alignment:
Q  12 tacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatcgcca 107  Q
    |||||| ||| ||||||||||| |||||||| || | |||| |||||||||||| |||| |||||||| |||| ||||  ||||||||||||||||    
T  21649471 tacacattctctctcagttccattactgacttgatcgttggggtgctaacgtgcttgcaggcacctttcgttccaccg--cgaagactcatcgcca 21649378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 12516251 - 12516176
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttt 79  Q
    |||||| ||||||| ||||||||||||||| |||| ||| |||| | |||||||||||||| ||||| ||||||||    
T  12516251 acacttattacacaatctttctcagttccattactaacttgagcgtcggagtgctaacgtgtctgcaggcaccttt 12516176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 107
Target Start/End: Original strand, 14860124 - 14860225
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatc 103  Q
    |||||| ||||| ||| ||||||||||||| |||||| | ||| ||  ||||||||| ||||||||| |||||||| |||| ||  |||||||| |||||    
T  14860124 acacttcttacaaactgtttctcagttccattactgagttgagaatcagagtgctaatgtgcctgcaagcacctttcgttccac--cacgaagattcatc 14860221  T
Q  104 gcca 107  Q
    ||||    
T  14860222 gcca 14860225  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 153
Target Start/End: Original strand, 28723807 - 28723946
Alignment:
Q  12 tacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatcgccaacgt 111  Q
    |||||||||||||| ||||||| || ||||| |||| ||||| ||| |||||||||    |||| ||| |||| ||||  ||||||||||| |||| |||    
T  28723807 tacacactctttcttagttccattagtgacttgagcgttggattgccaacgtgcctattagcacatttcgttccaccg--cgaagactcattgccaccgt 28723904  T
Q  112 accatagcactttccgccaccattgcctctcatccatcctca 153  Q
    |||  | |||||| || |||  || |||||||||||||||||    
T  28723905 accggaacacttttcgtcactgttacctctcatccatcctca 28723946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 8122970 - 8123014
Alignment:
Q  35 tactgactagagcattggagtgctaacgtgcctgcatgcaccttt 79  Q
    |||||||| |||| ||||||||||||||||||||||| |||||||    
T  8122970 tactgacttgagcgttggagtgctaacgtgcctgcatacaccttt 8123014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 9801109 - 9801188
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttc 84  Q
    ||||||| ||||||||||||||| |||| | |||||||| |||  || |||||||||||||| |||| |||||||| ||||    
T  9801109 acactttctacacactctttctctgttctattactgacttgagtgtt-gagtgctaacgtgcttgcaggcacctttcgttc 9801188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 12252047 - 12251954
Alignment:
Q  11 ttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatcgcc 106  Q
    ||||||||||||||||| || |  |||||||| |||  |  |||||||||| |||||||||||||||||||| |||  |  |||||||||||||||    
T  12252047 ttacacactctttctcattttcgttactgacttgagtgtcagagtgctaacatgcctgcatgcaccttttgtcctattg--cgaagactcatcgcc 12251954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 21342312 - 21342379
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcat 71  Q
    ||||||| || ||||||||| ||||||||| |||||||| |||| ||| | || ||||||||||||||    
T  21342312 acactttctatacactctttatcagttccattactgacttgagcgttgtactgttaacgtgcctgcat 21342379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 30606994 - 30606931
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcct 67  Q
    ||||||| ||| |||||||||||| ||||| |||||||| |||| ||||| ||||||| |||||    
T  30606994 acactttctactcactctttctcaattccattactgacttgagcgttggaatgctaacatgcct 30606931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 28715513 - 28715551
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgact 42  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  28715513 acactttatacacactctttctcagttccattactgact 28715551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 9007831 - 9007876
Alignment:
Q  34 atactgactagagcattggagtgctaacgtgcctgcatgcaccttt 79  Q
    ||||||||| |||| |||||||| ||||||||||||| ||||||||    
T  9007831 atactgacttgagcgttggagtgttaacgtgcctgcaggcaccttt 9007876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 12108475 - 12108410
Alignment:
Q  14 cacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttt 79  Q
    |||| ||||||||||||||| |||| ||| |||| | |||||| |||| ||| |||||||||||||    
T  12108475 cacattctttctcagttccattactaacttgagcgtcggagtggtaacatgcatgcatgcaccttt 12108410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 28715621 - 28715658
Alignment:
Q  119 cactttccgccaccattgcctctcatccatcctcatcg 156  Q
    |||||||||||||  |||||||||||||||||||||||    
T  28715621 cactttccgccacttttgcctctcatccatcctcatcg 28715658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 69248 - 69329
Alignment:
Q  3 cacactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttc 84  Q
    ||||||||| ||||| ||  ||||| |||| | ||||||| |||| |||||||||||||||||||||| |||||||||||||    
T  69248 cacacttttcacacattccatctcatttcctacactgacttgagcgttggagtgctaacgtgcctgcaggcaccttttgttc 69329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 40854 - 40778
Alignment:
Q  12 tacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctacc 88  Q
    ||||| |||| | |||||||||  ||||||| |||| ||||||||||||||||||||||||| ||||| ||||||||    
T  40854 tacactctctctttcagttccatcactgacttgagcgttggagtgctaacgtgcctgcatgcgcctttcgttctacc 40778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 268 - 326
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacg 62  Q
    |||||| ||||||||||||||||||||||| |||||||| |||| | ||||||||||||    
T  268 acacttcttacacactctttctcagttccattactgacttgagcgtcggagtgctaacg 326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 95835 - 95913
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgt 82  Q
    ||||||| ||| |||||||||||||||||| |||| ||| |||| ||| |||| ||||||||||||| | |||||||||    
T  95835 acactttctacgcactctttctcagttccattactaacttgagcgttgaagtggtaacgtgcctgcaggaaccttttgt 95913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 379782 - 379684
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatc 103  Q
    |||||| ||||||||||||||||||||||| ||||||||  ||  |   |||||||||||||||  |||||||||| |||| ||||  ||||||||||||    
T  379782 acacttcttacacactctttctcagttccattactgacttcagtgtcaaagtgctaacgtgcctagatgcacctttcgttccaccg--cgaagactcatc 379685  T

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Target: scaffold0002; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 121036 - 121096
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtg 64  Q
    ||||||| |||||||||||||||||||||| ||||||||  |||||  |||| ||||||||    
T  121036 acactttatacacactctttctcagttccattactgacttaagcatcagagtactaacgtg 121096  T

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Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 215338 - 215255
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctac 87  Q
    |||||| ||||||||||| | |||||| || |||||||| |||| ||||| ||||||||||||||||  || |||| |||||||    
T  215338 acacttcttacacactctctttcagtttcattactgacttgagcgttggattgctaacgtgcctgcagacaactttcgttctac 215255  T

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Target: scaffold0054 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 68838 - 68892
Alignment:
Q  17 actctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcat 71  Q
    ||||||||||||||||| |||| ||| |||| |||||||||||||||| ||||||    
T  68838 actctttctcagttccattactaacttgagcgttggagtgctaacgtgtctgcat 68892  T

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Target: scaffold0291 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 15455 - 15515
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtg 64  Q
    ||||||| || | ||||||||||||||||| |||||||| |||| | ||||||||||||||    
T  15455 acactttctagatactctttctcagttccattactgactggagcgtcggagtgctaacgtg 15515  T

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Target: scaffold0092 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 21643 - 21714
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcac 75  Q
    |||||| ||| ||||||| | |||||| ||||||||||| |||  |||||||||||||||||| ||| ||||    
T  21643 acacttcttaaacactctctttcagtttcaatactgacttgagtgttggagtgctaacgtgcccgcaggcac 21714  T

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Target: scaffold0074 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 35319 - 35248
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcac 75  Q
    |||||||  ||||||||||||||||||||  |||||||| |||  |  ||||||||||||||||||| ||||    
T  35319 acactttccacacactctttctcagttccgttactgacttgagtgtcagagtgctaacgtgcctgcaagcac 35248  T

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Target: scaffold0380 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 104
Target Start/End: Original strand, 6885 - 6983
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatc 103  Q
    |||||| |||||||||| ||||||||| ||||||||||| |||| |  |||  ||||||||||| |  ||| |||| |||| ||  ||||||||||||||    
T  6885 acacttcttacacactcgttctcagtttcaatactgacttgagcgtcagagacctaacgtgcctaccagcatctttcgttccac--cacgaagactcatc 6982  T

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Target: scaffold0174 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 29332 - 29398
Alignment:
Q  35 tactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttctaccgcacgaagactcatc 103  Q
    |||||||| |||| ||||||||||||| || || ||||||||||| |||| ||||  ||||||||||||    
T  29332 tactgacttgagcgttggagtgctaacatgactccatgcacctttcgttccaccg--cgaagactcatc 29398  T

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Target: scaffold0013 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 4449 - 4529
Alignment:
Q  4 acactttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcaccttttgttc 84  Q
    |||||| |||||| |||| | |||||| || || ||||| |||| ||||||||||||||||| ||||  ||||||| ||||    
T  4449 acacttcttacactctctctttcagtttcattagtgacttgagcgttggagtgctaacgtgcttgcagacacctttcgttc 4529  T

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Target: scaffold0012 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 149209 - 149141
Alignment:
Q  8 tttttacacactctttctcagttccaatactgactagagcattggagtgctaacgtgcctgcatgcacc 76  Q
    ||||||||||||| |||||| |||||||||| |||   |||||| | ||||||||| ||| ||||||||    
T  149209 tttttacacactccttctcatttccaatactcacttcggcattgaaatgctaacgttcctacatgcacc 149141  T

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