View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21096_low_2 (Length: 532)
Name: NF21096_low_2
Description: NF21096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21096_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 13 - 411
Target Start/End: Complemental strand, 24566644 - 24566246
Alignment:
| Q |
13 |
tcatcacaagttaccttctttatcttatggaagtatccatcacgtgaacatatttgatttgacaattgacgggtaacagatatggacaagatacgattta |
112 |
Q |
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| T |
24566644 |
tcataacaagttaccttctttatcttatggaagtatccatcacgtgaacatatttgatttgacaattgacgggtaacagatatggacaagatacgattta |
24566545 |
T |
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| Q |
113 |
tgaaattacgatcacttgaattgatgaaactgaattttatcaagttgtttttctgtgtgtttataatcaatataattgacatgttcaattaacccactcg |
212 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24566544 |
tgaaattatgatcacttgaattgatgaaactgaattttatcaagttgttttcctgtgtgtttataatcaatataattgacatgttcaattaacccactcg |
24566445 |
T |
|
| Q |
213 |
agcacctacattccatatcgtcttctgcataatatgtggattggatgggtatttgcaaaaattatttttagtttgagaatgagaaagataaacaattgta |
312 |
Q |
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| T |
24566444 |
agcacctacattccatatcgtcttctgcataatatgtggattggatgggtatttgcaaaaattatttttagtttgagaatgagaaagataaacaattgta |
24566345 |
T |
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| Q |
313 |
ctaaaaaagtttctttatgattaaatgtttctttcatgcaatagtctttcttatcaagcatgtatcacgagtgtagaagactatactgatcattgggtt |
411 |
Q |
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| T |
24566344 |
ctaaaaaagtttctttatgattaaatgtttctttcatgcaatagtctttcttatcaagcatgtatcacgagtgtagaagactatactgatcattgggtt |
24566246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 424 - 498
Target Start/End: Complemental strand, 24565336 - 24565262
Alignment:
| Q |
424 |
cttataattcaaaatagaaaaatattataagtttttattcttcaagatattacttttttaagatttgacaattat |
498 |
Q |
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| T |
24565336 |
cttataattcaaaatagaaaaatattataagtttttattcttcaagatattacttttttaagatttgacaattat |
24565262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 9e-59; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 234 - 489
Target Start/End: Original strand, 45532545 - 45532795
Alignment:
| Q |
234 |
cttctgcataatatgtggattggatgggtatttgcaaaaattatttttagtttgagaatgagaaagataaacaattgtactaaaaaagtttctttatgat |
333 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||||| || |||||||||||||||| |||||||||| ||||||||||||||| | |||| |
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| T |
45532545 |
cttctgcataatatgtggattggatatgtattttaaaaaattatttataatttgagaatgagaaaggtaaacaattgaactaaaaaagtttctctgtgat |
45532644 |
T |
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| Q |
334 |
taaatgtttctttcatgca--atagtctttcttatcaagcatgtatcacgagtgtagaagactatactgatcattgggttataatatgaccacttataat |
431 |
Q |
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| T |
45532645 |
gaaatgcttctttcatgtattagagactttcatatcaagcatgtatcacgaatgtagaa----atactcatcattgggttataatatgaccaattataat |
45532740 |
T |
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| Q |
432 |
tcaaaatagaaaaatattataagtttttattcttcaagatattacttttttaagattt |
489 |
Q |
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| T |
45532741 |
tcaaaat---aaaaaatttgaagtttttattcttaaagatattacattttaaagattt |
45532795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 172 - 498
Target Start/End: Complemental strand, 44339720 - 44339384
Alignment:
| Q |
172 |
tttataatcaatataattgacatgttcaattaacccactcgagcacctacattccatatcgtcttctgcataatatgtggattggatgggtatttgcaaa |
271 |
Q |
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|||| ||||||||||| | | || ||||||||| ||||| |||||| ||||| || ||||||| ||| ||||||| || ||||| |||||||||| |
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| T |
44339720 |
tttaaaatcaatataaataatatattcaattaaatcactccagcaccaacattttatgctgtcttctacatgatatgtgaatcagatggatatttgcaaa |
44339621 |
T |
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| Q |
272 |
aattatttttagtttgagaatgagaaagataaacaattgtactaaaaaagtttctttatgattaaatgtttctttcatgcaatag----tctttcttatc |
367 |
Q |
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|| || || ||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||| |||| |||| |
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| T |
44339620 |
aactacttacagtttgagaataagaaagataaacaattgtactaaaaaagcttctttgtgattaaatgcttctttcatgcaatagagacactttgatatc |
44339521 |
T |
|
| Q |
368 |
aagc--atgtatcacgagtgtag-------aagactatactgatcattgggttataatatgaccacttataattcaaaatagaaaaatattataagtttt |
458 |
Q |
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|| | || |||||||||| ||| ||||||| ||| ||||||| ||||||||||||||| |||||||||||| || ||| |||| |||||| |
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| T |
44339520 |
aaacatatatatcacgagtttagaagactcaagactacactcatcattgagttataatatgaccaattataattcaaagtataaa---attagcagtttt |
44339424 |
T |
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| Q |
459 |
tattcttcaagatattacttttttaagatttgacaattat |
498 |
Q |
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||||||||| |||||| ||||||| ||||||||||||||| |
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| T |
44339423 |
tattcttcatgatatttctttttttagatttgacaattat |
44339384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 172 - 356
Target Start/End: Original strand, 44335247 - 44335431
Alignment:
| Q |
172 |
tttataatcaatataattgacatgttcaattaacccactcgagcacctacattccatatcgtcttctgcataatatgtggattggatgggtatttgcaaa |
271 |
Q |
| |
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|||| ||||||||||| | | || ||||||||| ||||| |||||||||||| || ||||| ||||| ||||||| || |||| |||||||||| |
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| T |
44335247 |
tttaaaatcaatataaataatatattcaattaaatcactccagcacctacattttatgatgtcttatgcatgatatgtgaatcagatgaatatttgcaaa |
44335346 |
T |
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| Q |
272 |
aattatttttagtttgagaatgagaaagataaacaattgtactaaaaaagtttctttatgattaaatgtttctttcatgcaatag |
356 |
Q |
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|| || || ||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||| |
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| T |
44335347 |
aactacttacagtttgagaataagaaagataaacaattgtactaaaaaagcttctttgtgattaaatgcttctttcatgcaatag |
44335431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 45532459 - 45532540
Alignment:
| Q |
123 |
atcacttgaattgatgaaactgaattttatcaagttgtttttctgtgtg-tttataatcaatataattgacatgttcaatta |
203 |
Q |
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|||||||||||| ||||||||||||||||||||||| |||| ||||||| |||| ||||||| ||||||||||||||||||| |
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| T |
45532459 |
atcacttgaatttatgaaactgaattttatcaagtttttttcctgtgtgttttaaaatcaatctaattgacatgttcaatta |
45532540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 409 - 498
Target Start/End: Original strand, 44335504 - 44335590
Alignment:
| Q |
409 |
gttataatatgaccacttataattcaaaatagaaaaatattataagtttttattcttcaagatattacttttttaagatttgacaattat |
498 |
Q |
| |
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|||||||||| |||| |||||||||||| || |||| ||| ||||||||||||||| |||||| ||||||| ||||||||||||||| |
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| T |
44335504 |
gttataatattaccagttataattcaaagtataaaa---ttagcagtttttattcttcatgatatttctttttttagatttgacaattat |
44335590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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