View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21096_low_4 (Length: 496)
Name: NF21096_low_4
Description: NF21096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21096_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 14 - 484
Target Start/End: Original strand, 36239005 - 36239473
Alignment:
| Q |
14 |
agaggatggatcaaggaatttccttgttgagaataagtttgatcactaaattcttttgataaatcagcattactaagttctttatgtaatgatgatggca |
113 |
Q |
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| T |
36239005 |
agaggatggatcaaggaatttccttgttgagaataagtttgatcactaaattcttttgataaatcagcattactaagttctttatgtaatgatgatggca |
36239104 |
T |
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| Q |
114 |
tttgctgtattgatatacattggtgatcacataaatccaattaatccttaggtactcagttacgttgcactgctccattcttcaaacaactatttaaact |
213 |
Q |
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| T |
36239105 |
tttgctgtattgatatacattggtgatcacataaatccaattaatccttaggtactcagttacgttgcattgctccattcttcaaacaactatttaaact |
36239204 |
T |
|
| Q |
214 |
atgatattacattatatgtggctgagaaaagtgtgcctcacccctttgtagtggccatcatgttcacatacctattcataaagtttgttgatatatgtaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36239205 |
atgatattacattatatgtggctgagaaaagtgtgcctcacccctttgtagtggccatcatgttcacatacctattcataaagtttgttgatatatgtaa |
36239304 |
T |
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| Q |
314 |
tttacaactatacttttcagtgacgctagaaacttcaacttagattgctgtcaaaataaaaccttgaacttagattgatgatgcattaatattgagaaaa |
413 |
Q |
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| T |
36239305 |
tttacaactatacttttcggtgacgctagaaacttcaacttagattgctgtcaaaataaaaccttgaacttagattgatgatgcattaatattgagaaaa |
36239404 |
T |
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| Q |
414 |
ctattatgatatattgcctcnnnnnnnnctattctgagagattttaaggtgactttaagagggactaatat |
484 |
Q |
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| T |
36239405 |
ctattat--tatattgcctcaaaaaaaactattctgagagattttaaggtgactttaagagggactaatat |
36239473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 20969138 - 20969239
Alignment:
| Q |
16 |
aggatggatcaaggaatttccttgttgagaataagtttgatcactaaattcttttgataaatcagcattactaagttctttatgtaatgatgatggcatt |
115 |
Q |
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|||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
20969138 |
aggatggatcaaagaacttccttgttgagaataagtttggtcactaaattcttttgataaatcagcattgctaagttctttatgtaatgatgattgcatt |
20969237 |
T |
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| Q |
116 |
tg |
117 |
Q |
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|| |
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| T |
20969238 |
tg |
20969239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 20969239 - 20969283
Alignment:
| Q |
177 |
gttgcactgctccattcttcaaacaactatttaaactatgatatt |
221 |
Q |
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| T |
20969239 |
gttgcactgctccattcttcaaataactatttaaactatgatatt |
20969283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 274 - 336
Target Start/End: Original strand, 20969284 - 20969346
Alignment:
| Q |
274 |
tgttcacatacctattcataaagtttgttgatatatgtaatttacaactatacttttcagtga |
336 |
Q |
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| T |
20969284 |
tgttcacatatctatttatagagtttgctaatatatgtaatttaaaactatacttttcagtga |
20969346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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