View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21096_low_5 (Length: 484)
Name: NF21096_low_5
Description: NF21096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21096_low_5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 17 - 484
Target Start/End: Complemental strand, 48502267 - 48501805
Alignment:
| Q |
17 |
cactttttattagaagcaattcaaaccaatttttcttttaaaagatgtagcttctcaaaataaaaatannnnnnngtgattcatttgagttactactatt |
116 |
Q |
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| T |
48502267 |
cactttttattagaagcaattcaaaccaatttttcttttaaaagatgtagcttctcaaaataaaaatatttttt-gtgattcatttgagttactactatt |
48502169 |
T |
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| Q |
117 |
tatttaatcactacatacgtgtaatgcgccagaccccataaactaaccgaaacaatgccaatctgcgtacatgaataagacaacaatttcctttcaatta |
216 |
Q |
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| T |
48502168 |
ta----atcactacatacgtgtaatgcgccagaccccataaactaaccgaaacaatgccaatctgcgtacatgaatacgacaacaatttcctttcaatta |
48502073 |
T |
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| Q |
217 |
tacatctaacaaacaagtacagaaactcactacaaacactatctataaatccaaactaggtctcaaataagacagacaaaccttattacaaccacccgtt |
316 |
Q |
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| T |
48502072 |
tacatctaacaaacaagtacaaaaactcactacaaacactatctataaatccaaactaggtctcaaataagacagaaaaaccttattacaaccacccgtt |
48501973 |
T |
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| Q |
317 |
cctcttctcttcatggcttcaaaatccttccatgttggcaatcacattatcattcattctctccttaaaactaaccccattaactcaatcctctttcaat |
416 |
Q |
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| T |
48501972 |
cctcttctcttcatggcttcaaaatccttccatgttggcaatcacattatcattcattctctccttaaaactaaccccattaactcaatcctctttcaat |
48501873 |
T |
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| Q |
417 |
ccatattccgttaacaacacaccatacaatatcaatatggatatttggtcatggatatctgaactccc |
484 |
Q |
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| T |
48501872 |
ccatattccgttaacaacacaccatacaatatcaatatggatatttggtcatggatatctgaactccc |
48501805 |
T |
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