View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21096_low_6 (Length: 468)
Name: NF21096_low_6
Description: NF21096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21096_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 11616759 - 11617208
Alignment:
| Q |
1 |
ttgttaataaactcaaaatgatatcaagaaaaccattcaatgcactagacatgatgtcacaaggaacaattacagacatgttaagggaaatgattatttg |
100 |
Q |
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| T |
11616759 |
ttgttaataaactcaaaatgatatcaagaaaaccattcaatgcactagacatgatgtcacaaggaacaattacagacatgttaagggaaatgattatttg |
11616858 |
T |
|
| Q |
101 |
tggattcaatccgacaaatgaaccttttctttccgtgatgttgagaacaatatgtgcaacaaagttacaagagttgcagctcaaaactaggatttttgtt |
200 |
Q |
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| T |
11616859 |
tggattcaatccgacaaatgaaccttttctttccatgatgttgagaacaatatgtgcaacaaagttacaagagttgcagctcaaaactaggatttttgtt |
11616958 |
T |
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| Q |
201 |
cggaaaggaagatcaatgttaggatgcttggacgaaacaaggacattaaaatatggtgaggtatttgtgcagatatctcttccaagaaaaaatgttatgt |
300 |
Q |
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| T |
11616959 |
cggaaaggaagatcaatgttaggatgcttggatgaaacaaggacattaaaatatggtgaggtatttgtgcagatatctcttccaagaaaaaatgttatgt |
11617058 |
T |
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| Q |
301 |
cctcaatttcttctaagggcattggagcnnnnnnnggaaaatatattgttaaggggaaggtagttgtagccaagaatccatgtcttcatccaggagatgt |
400 |
Q |
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|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11617059 |
cctcaatttcttctaaggacattggagcaaaaaaaggaaaatatattgttaaggggaaggtagttgtagccaagaatccatgtcttcatccaggagatgt |
11617158 |
T |
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| Q |
401 |
aaggattttgagagcgatcgatgtaccttccttacatcatatggtagatt |
450 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11617159 |
aaggattttgagagcgatcgatgtaccctccttacatcatatggtagatt |
11617208 |
T |
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