View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21096_low_7 (Length: 426)
Name: NF21096_low_7
Description: NF21096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21096_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-159; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 70 - 411
Target Start/End: Original strand, 33259358 - 33259708
Alignment:
| Q |
70 |
aaggtaagctagaggtttagaatgggacagat------agatgatgatgtgagactcatatgttttgaaggtggtgttattggacatggatgagtctaaa |
163 |
Q |
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| T |
33259358 |
aaggtaagctagaggtttagaatgggacatatcttaatagatgatgatgcgagacttatatgttttgaaggtggtgttattggacatggatgagtctaaa |
33259457 |
T |
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| Q |
164 |
a-tccaccctaaaacatatactacgttctatattttccatgaataaattaggacaagttttcaatggaccggtgaaaaaccattgctaagtagtatcatc |
262 |
Q |
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| T |
33259458 |
aatccaccctaaaacatatactacgttctatatttcccatgaataaattaggacaagatttgaatggaccggtgaaaaaccattgctaagtagtatcatc |
33259557 |
T |
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| Q |
263 |
aattaagcaaacaatttgcaagcaaacaa--taacaaagattctctcaactgatattccaacctcttttgatcatgttttgaatcttgaattattggaat |
360 |
Q |
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| T |
33259558 |
aattaagcaaacaatttgcaagcaaacaaactaacaaagattctctcaactgatattccaacctcttttgatcatgttttgaatcttgaattattggaat |
33259657 |
T |
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| Q |
361 |
ccatagctgccccacaaggcacatggttaacaactcccctatggttgcttc |
411 |
Q |
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| T |
33259658 |
ccatagctgccccacaaggcacatggttaacaactcccctatggttgcttc |
33259708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 12923876 - 12923933
Alignment:
| Q |
14 |
atatagccctttcccatggtgggaaagaaaattccattcccaggctaaacttaaccaa |
71 |
Q |
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| T |
12923876 |
atatggccctttcccatggtgggaaagaaaattccattcccaggctaaacttaaccaa |
12923933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 12912162 - 12912112
Alignment:
| Q |
19 |
gccctttcccatggtgggaaagaaaattccattcccaggctaaacttaacc |
69 |
Q |
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| T |
12912162 |
gccctttcccatggtgggaaagaaaattccattcccaggctaaacttaacc |
12912112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 40375255 - 40375295
Alignment:
| Q |
22 |
ctttcccatggtgggaaagaaaattccattcccaggctaaa |
62 |
Q |
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| T |
40375255 |
ctttcccatggtgggaaagaagtatccattcccaggctaaa |
40375295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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