View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21096_low_9 (Length: 380)
Name: NF21096_low_9
Description: NF21096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21096_low_9 |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 20 - 347
Target Start/End: Complemental strand, 27814949 - 27814630
Alignment:
| Q |
20 |
caacatgtaaacttttatttgattgatgactgtttgaaatatatgtttattcattgtcttatagtatatattatctgcatataataatgtttttctttta |
119 |
Q |
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| T |
27814949 |
caacatgtaaacttttatttgattcatgactgtttgaaatatatgtttattcattgtcttata-------ttatctgcatataataatgtttttctttta |
27814857 |
T |
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| Q |
120 |
tgtttttgattgttatttcaatcaaatttcacaagaataaaaaa-tttgcagtttatgcatgcgcatgtattttccattctaattaaacaagttcattgt |
218 |
Q |
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| T |
27814856 |
tgtttctgattgttatttcaatcaaatttcacaagaataaaaaagtttgcagtttatgcatgtgcatgtattttccattctaa----acaagttcattgt |
27814761 |
T |
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| Q |
219 |
ggacttgtgggaaggaataata--gaaatatcataattgtgctccagttaataaagttagagaatgaagttcaatatgatcactctcagagcggtaactt |
316 |
Q |
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| T |
27814760 |
ggacttgtgggaaggaataatatagaaatatcataattgtgctccacttaataaagttagagaatgaagttcaatatgatcactctcagagcgataactt |
27814661 |
T |
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| Q |
317 |
tttgccattgaaaaaagagagaaaaagtgtg |
347 |
Q |
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| T |
27814660 |
tttgccattgaaaaaagagacaaaaagtgtg |
27814630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 338 - 380
Target Start/End: Complemental strand, 32723307 - 32723265
Alignment:
| Q |
338 |
aaaaagtgtgtttttatgttgtaggagctaaaaacaaaattct |
380 |
Q |
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| T |
32723307 |
aaaaagtgtgattttattttgtaggaactaaaaacaaaattct |
32723265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 338 - 380
Target Start/End: Original strand, 16539464 - 16539506
Alignment:
| Q |
338 |
aaaaagtgtgtttttatgttgtaggagctaaaaacaaaattct |
380 |
Q |
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| T |
16539464 |
aaaaagtgtgattttattttgtaggaactaaaaacaaaattct |
16539506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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