View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_high_100 (Length: 238)
Name: NF21097_high_100
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_high_100 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 42701460 - 42701240
Alignment:
| Q |
18 |
tttggcacatgcagtaaggatgtgctttagatttttgctcgaaattgctaccatagtttgtctccaactgtccatttcaagcgaagcaaaattggttccg |
117 |
Q |
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| T |
42701460 |
tttggcacatgcagtaaggatgtgctttagatttttgctcgaaattgctaccatagtttgtctccaactgtccatttcaagcgaagcaaaattggttccg |
42701361 |
T |
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| Q |
118 |
ttgctgatagcactgtcgtaactatcaagattatcagagtcaggaccaagcattacactttccaactctctaagcttgtgtttgaagctacttaaatctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42701360 |
ttgctgatagcactgtcgtaactatcaagattatcagagtcaggaccaagcattacactttccaactctctaagcttgtgtttgaagctacttaaatctt |
42701261 |
T |
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| Q |
218 |
cggttatgcatgatccactca |
238 |
Q |
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||||||||||||||||||||| |
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| T |
42701260 |
cggttatgcatgatccactca |
42701240 |
T |
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