View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_high_12 (Length: 586)
Name: NF21097_high_12
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 13 - 571
Target Start/End: Original strand, 42973719 - 42974275
Alignment:
| Q |
13 |
cagaaacatctgaagaaaacaccccagaaacattgtatgcactttttcccaacaataagaaaagggaggaaggcatcaattttattttttgtctgatagc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42973719 |
cagaaacatctgaagaaaacaccccagaaacattgtatgcactttttcccaacaataagaaaagggaggaaggcatcagttttattttttgtctgatagc |
42973818 |
T |
|
| Q |
113 |
caagattactcctgatgtgtgcttacagagatgacatgtctgtacaccattttggtgtgtgctttttctagttctggtctaggattcaagtattatggta |
212 |
Q |
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| T |
42973819 |
caagattactcctgatgtgtgcttacagagatgacatgtctgtacaccattttggtgt--------------tctggtctgggattcaagtattatggta |
42973904 |
T |
|
| Q |
213 |
gatagttggggttgggacgatacatttcaatttttctattaactcaaccacaaagacacaagaaggatggacggtgttgagtattgcctatcatcgaacg |
312 |
Q |
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| T |
42973905 |
gatagttggggttgggacgatacatttcaatttttctattaactcaaccacaaagatacaagaaggatggacaatgttgagtattgcgtatcatcgaccg |
42974004 |
T |
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| Q |
313 |
actaagatggaagcgttcaattcaccttattaatgataattggtaactcttcaaaaaggacatcttttcggatatgtaatatttctatttccttcatttg |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42974005 |
actaagatggaagcgttcaattcaccttattaatgataattggtaactcttcaaaaaggacattttttcggatatgtaatatttctatttccttcatttg |
42974104 |
T |
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| Q |
413 |
ttgtatttcaattataaaaagaagtt------------ttgttgtacttcaatcataaaaagaagttttgttggtcagatatattggtgagtacttcatc |
500 |
Q |
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| T |
42974105 |
ttgtatttcaattataaaaagaagttttgttgatctgattgttgtacttcaatcataaaaagaagttttgttggtcagatatattggtgagtacttcatc |
42974204 |
T |
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| Q |
501 |
atgtgtacttttaatcgtttttgaaatatagttgtacttttaatacataccaattctctcgtgatatttga |
571 |
Q |
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| T |
42974205 |
atgtgtacttttaatcgtttttgaaatatagttgtacttttaatatataccaattctctcgtgatatttga |
42974275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 255 - 296
Target Start/End: Original strand, 14252389 - 14252430
Alignment:
| Q |
255 |
ctcaaccacaaagacacaagaaggatggacggtgttgagtat |
296 |
Q |
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| T |
14252389 |
ctcaaccacaaagacacaagaaggatggacaatgttgagtat |
14252430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 296
Target Start/End: Complemental strand, 15499989 - 15499946
Alignment:
| Q |
253 |
aactcaaccacaaagacacaagaaggatggacggtgttgagtat |
296 |
Q |
| |
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| T |
15499989 |
aactcaaccacaaagacactaggagggtggacggtgttgagtat |
15499946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 18690573 - 18690531
Alignment:
| Q |
254 |
actcaaccacaaagacacaagaaggatggacggtgttgagtat |
296 |
Q |
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| T |
18690573 |
actcaaccacaaagacacaaggagggtggacagtgttgagtat |
18690531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 12191410 - 12191373
Alignment:
| Q |
256 |
tcaaccacaaagacacaagaaggatggacggtgttgag |
293 |
Q |
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||||||||||||||||||| ||| |||||||||||||| |
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| T |
12191410 |
tcaaccacaaagacacaaggagggtggacggtgttgag |
12191373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 12435838 - 12435801
Alignment:
| Q |
256 |
tcaaccacaaagacacaagaaggatggacggtgttgag |
293 |
Q |
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||||||||||||||||||| ||| |||||||||||||| |
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| T |
12435838 |
tcaaccacaaagacacaaggagggtggacggtgttgag |
12435801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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