View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_high_14 (Length: 549)
Name: NF21097_high_14
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 324 - 527
Target Start/End: Complemental strand, 1587735 - 1587532
Alignment:
| Q |
324 |
ttataacatcacctgattattgtcaagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttgagttttttaccctttttaaaactatttttg |
423 |
Q |
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| T |
1587735 |
ttataacatcacctggttattgtcaagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttgagttttttaccctttttaaaactatttttg |
1587636 |
T |
|
| Q |
424 |
ctcacaacagttttccaaccacgtagaagactgtaatacttgttagttcccatgctccacttcctcaaagacattctgaactctctaaaagaagggtcca |
523 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1587635 |
ctcacaacagttttccaaccacgtagaagactgtaatacttgttagttcccatgctccacttcctcaaagacattgtgaactctctaaaagaagggtcca |
1587536 |
T |
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| Q |
524 |
acac |
527 |
Q |
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|||| |
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| T |
1587535 |
acac |
1587532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 205 - 300
Target Start/End: Complemental strand, 1588362 - 1588267
Alignment:
| Q |
205 |
ggaccaacatgatcaaggagaataatctagtcacttaaggtgtcatagccaaatttttaaaagcaacatactataaaacattttgcaatgctaact |
300 |
Q |
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| T |
1588362 |
ggaccaacatgatcaaggagaataatctagtcccttaaggtgtcagagtcaaatttttaaaagcaacatactataaaacattttgcaatgctaact |
1588267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 99 - 178
Target Start/End: Complemental strand, 1588468 - 1588389
Alignment:
| Q |
99 |
taacagttgaacatcaaaatcatcataagcagtagaattcaaaccccataaagcaattaaagcttatcttcaagcaattt |
178 |
Q |
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| T |
1588468 |
taacagttgaaaatcaaaatcatcataagcagtagaattcagaccccataaagcaattaaagcttatcttcaagcaattt |
1588389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 334 - 534
Target Start/End: Complemental strand, 1581243 - 1581052
Alignment:
| Q |
334 |
acctgattattgtcaagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttgagttttttaccctttttaaaactatttttgctcacaacag |
433 |
Q |
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|||| ||| ||||| |||| ||||||||||||| |||||||||||| ||||| ||||||||||||| ||| ||| ||||||||||| |||| |||| |
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| T |
1581243 |
acctaatttttgtcgagtagaaagtgcaacttgctattgaccctaaatgtccaaatgttgagtttttgaccaatttcaaaactattttgcctcataacat |
1581144 |
T |
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| Q |
434 |
ttttccaaccacgtagaagactgtaat-acttgttagttcccatgctccacttcctcaaagacattctgaactctctaaaagaagggtccaacacgatca |
532 |
Q |
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| T |
1581143 |
gtttccaatcttgtacaagactgtaaagactttt----------gccccacttcctcaaagacattgtgaactctctaaaagaagggtccaacacaatca |
1581054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 1588914 - 1588841
Alignment:
| Q |
27 |
ttgagagccaatccttaaatgatatcgtcacagacgagacgacattaataaaagatagcaaaaaattaaagttaa |
101 |
Q |
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| T |
1588914 |
ttgagaaccaatccttaaatgatatcgtcactgacgaaacgacattaataaaa-atagcaaaaaattaaagttaa |
1588841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 334 - 534
Target Start/End: Original strand, 1603572 - 1603763
Alignment:
| Q |
334 |
acctgattattgtcaagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttgagttttttaccctttttaaaactatttttgctcacaacag |
433 |
Q |
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|||| ||| ||||| |||| ||||||||||||| |||||||||||| ||||| ||||||||||||| ||| ||| ||||||||||| |||| |||| |
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| T |
1603572 |
acctaatttttgtcgagtagaaagtgcaacttgctattgaccctaaatgtccaaatgttgagtttttgaccaatttcaaaactattttgcctcataacat |
1603671 |
T |
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| Q |
434 |
ttttccaaccacgtagaagactgtaat-acttgttagttcccatgctccacttcctcaaagacattctgaactctctaaaagaagggtccaacacgatca |
532 |
Q |
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| T |
1603672 |
gtttccaatcttgtacaagactgtaaagactttt----------gccccacttcctcaaagacattgtgaactctctaaaagaagggtccaacacaatca |
1603761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 490 - 534
Target Start/End: Original strand, 1590654 - 1590698
Alignment:
| Q |
490 |
aaagacattctgaactctctaaaagaagggtccaacacgatcact |
534 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1590654 |
aaagacattctgaactctctaaaagaagggtccaacacaatcact |
1590698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 171; Significance: 1e-91; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 324 - 534
Target Start/End: Original strand, 19270050 - 19270260
Alignment:
| Q |
324 |
ttataacatcacctgattattgtcaagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttgagttttttaccctttttaaaactatttttg |
423 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
19270050 |
ttataacatcacctgattattgtcgagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttaagttttttacccttttcaaaactatttttg |
19270149 |
T |
|
| Q |
424 |
ctcacaacagttttccaaccacgtagaagactgtaatacttgttagttcccatgctccacttcctcaaagacattctgaactctctaaaagaagggtcca |
523 |
Q |
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||||||||||||||||||||| ||| ||||||||||||||||||| | |||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
19270150 |
ctcacaacagttttccaaccatgtacaagactgtaatacttgttaatgcccatgctccacttcctcaacgacattgtgaactctctaaaagaagggtcca |
19270249 |
T |
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| Q |
524 |
acacgatcact |
534 |
Q |
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|||| |||||| |
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| T |
19270250 |
acacaatcact |
19270260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 27 - 178
Target Start/End: Original strand, 19268095 - 19268252
Alignment:
| Q |
27 |
ttgagagccaatccttaaatgatatc--gtcacagacgagacgacattaataaaagatagcaaaaaattaaagttaacagttgaacatcaaaatcatca- |
123 |
Q |
| |
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|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
19268095 |
ttgagaaccaatccttaaatgatatctcgtcacagacgagacgacattaataaaagatagcacaaaattaaagttaacagttgaacatcaaaaccatcat |
19268194 |
T |
|
| Q |
124 |
---taagcagtagaattcaaaccccataaagcaattaaagcttatcttcaagcaattt |
178 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||| |||||||||||| |
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|
| T |
19268195 |
aattaagcagtagaattcaaaccctataaagcaatcaaagcttattttcaagcaattt |
19268252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 19268279 - 19268331
Alignment:
| Q |
205 |
ggaccaacatgatcaaggagaataatctagtcacttaaggtgtcatagccaaa |
257 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
19268279 |
ggaccaacatgatcaaggagaataatctagtcatttaaggtgtcatagtcaaa |
19268331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 205 - 291
Target Start/End: Original strand, 39614941 - 39615029
Alignment:
| Q |
205 |
ggaccaacatgatcaaggagaataatctag--tcacttaaggtgtcatagccaaatttttaaaagcaacatactataaaacattttgca |
291 |
Q |
| |
|
||||||||||||||||||| |||||| ||| |||| ||||||||||||| |||||| |||||||||||||| |||||||||||||||| |
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| T |
39614941 |
ggaccaacatgatcaaggaaaataatgtagagtcacctaaggtgtcatagtcaaattgttaaaagcaacataatataaaacattttgca |
39615029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 102 - 165
Target Start/End: Complemental strand, 8152933 - 8152870
Alignment:
| Q |
102 |
cagttgaacatcaaaatcatcataagcagtagaattcaaaccccataaagcaattaaagcttat |
165 |
Q |
| |
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||||||||||||||||||||||||||||||| |||| || | |||||||| ||| ||||||||| |
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| T |
8152933 |
cagttgaacatcaaaatcatcataagcagtataattaaacctccataaagtaatcaaagcttat |
8152870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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