View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_high_15 (Length: 527)
Name: NF21097_high_15
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 19 - 290
Target Start/End: Original strand, 4882508 - 4882779
Alignment:
| Q |
19 |
taaatgtggttccttgtcaagttaagaaatgataatctaacatgtacgttcagttaagaacaagccagtatatgtgttgtcatgttgttcacgtatatca |
118 |
Q |
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| T |
4882508 |
taaatgtggttccttgtcaagttaagaaatgataatctaacatgtacgttcagttaagaacaagccagtatatgtgttgtcatgttgttcacgtatatca |
4882607 |
T |
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| Q |
119 |
tggaagataactacatcgacactgtctttgaatactcagacatgagactttttatttggttcgtagtacaaaaaatgtattttctgatgaaaggttttgt |
218 |
Q |
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| T |
4882608 |
tggaagataactacatcgacactgtctttgaatactcagacatgagactttttatttggttcgtagtacaaaaaatgtattttctgatgaaaggttttgt |
4882707 |
T |
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| Q |
219 |
ccaatacaattaacttgaagttcaaggttttgaaaaatcagtaacgtgcaaagaaattaatgtaacattcag |
290 |
Q |
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| T |
4882708 |
ccaatacaattaacttgaagttcaaggttttgaaaaatcagtaacgtgcaaagaaattaatgtaacattcag |
4882779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 362 - 520
Target Start/End: Original strand, 4882851 - 4883009
Alignment:
| Q |
362 |
ttgaatacttaatcatgtacatataatcgacgatcttttaagtgttaaatgtgatttctaaaatgcattaagcaaccgttattatagtgcatctagaccc |
461 |
Q |
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| T |
4882851 |
ttgaatacttaatcatgtacatataatcgacgatcttttaagtgttaaatgtgatttctaaaatgcattaagcaaccgttattatagtgcatctagaccc |
4882950 |
T |
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| Q |
462 |
ctatttagaaactatggcaaataccaccaacgtagatcttggccatgtatcctatgcta |
520 |
Q |
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| T |
4882951 |
ctatttagaaactatggcaaataccaccgacgtagatgttggccatgtatcctatgcta |
4883009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 451
Target Start/End: Original strand, 28383572 - 28383658
Alignment:
| Q |
366 |
atacttaatcatgtacatataatcgacgatc-ttttaagtgttaaatgtgatttctaaaatgcattaagcaaccgttattatagtgc |
451 |
Q |
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||||||||||||||| ||||| | ||||||| ||||| | ||| |||||||||||||||||||||||| | || |||||| ||||| |
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| T |
28383572 |
atacttaatcatgtaaatatatttgacgatcgttttatgcgttggatgtgatttctaaaatgcattaaggagcccttattacagtgc |
28383658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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