View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21097_high_23 (Length: 495)

Name: NF21097_high_23

Description: NF21097

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF21097_high_23

[»] chr7 (1 HSPs)

Alignment Details

Target: chr7 (Bit Score: 410; Significance: 0; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 410; E-Value: 0

Query Start/End: Original strand, 18 - 495

Target Start/End: Original strand, 13706964 - 13707440

Alignment:

Q	18	gatgacacaaataatttttctagtgatttcagattttagacaagtagaatcataatatgttttactaaaatgtgttattctcaatgtcataaaaattaac	117	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13706964	gatgacacaattaatttttctagtgatttaagattttagacaagtagaatcataatatgttttactaaaatgtgttattctcaatgtcataaaaattaac	13707063	T

Q	118	gtctcttctttgtaggtttaattcatgatcgggatttaatttcatgtcggcctgtcacttacaaatcttgaaaagtgtgaccttccaccatttaggaggg	217	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|
T	13707064	gtctcttctttgtaggtttaattcatgatcgggatttaatttcatgtcggtc-gtcacttacaaatactgaaaagtgtgaccttccaccatttaggaagg	13707162	T

Q	218	aatctataaacctaaaaccatcaatgaactcgttgaaaattttcatatcacattctctagaataattagcattcccattgttttccatatttgatctgag	317	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13707163	aatctataaacataaaaccatcaatgaactcgttgaaaattttcatatcacactttctagaataattagcattcccattgttttccatatttgatctgag	13707262	T

Q	318	tgcattaaaatctccacaagtacatcaggtcgaaaaagaatcactgactaccttatgacataattgctcccacaacactcattttccctccaaaacacaa	417	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13707263	tgcattaaaatctccacaagtacgtcaggtcggaaaagaatcactaactaccttatgacataattgctcccacaacactcatattccctccaaaacacaa	13707362	T

Q	418	ggagtatatacattataggtagtaaaatgttctttgttattgagctcatatctgatataaacaacgcactattaaaat	495	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13707363	ggagtatatacattataggtagtaaaatgctctttgttattgagctcatatccgatataaacaacgcactattaaaat	13707440	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]