View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_high_24 (Length: 493)
Name: NF21097_high_24
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Complemental strand, 42443041 - 42442555
Alignment:
| Q |
1 |
accctctcactcaaacctcaaccttcactctccttcgatcacccttacccaccaaccaaactcatgttccatcccgccacacattcttctctccagaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42443041 |
accctctcactcaaacctcaaccttcactctccttcgatcacccttacccaccaaccaaactcatgttccatcccgccacacattcttctctccagaaaa |
42442942 |
T |
|
| Q |
101 |
cctcctccgacctccttgctacctccggtgactatctccgtctctgggaagttcgtgaaaattccgttgaagctctttctcttttcaacaatagcaaaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42442941 |
cctcctccgacctccttgctacctccggtgactatctccgtctctgggaagttcgtgaaaattccgttgaagctctttctcttttcaacaatagcaaaac |
42442842 |
T |
|
| Q |
201 |
cagtgagttttgtgctcctttaacatcatttgattggaatgaaattgagcccaaacgaattggaacttcaagtattgacactacttgtactatctgggac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42442841 |
cagtgagttttgtgctcctttaacatcatttgattggaatgaaattgagcccaaacgaattggaacttcaagtattgacactacttgtactatctgggac |
42442742 |
T |
|
| Q |
301 |
attgaaagaggcgttgttgaaacgcagttaattgcgcatgataaagaggtttatgatattgcttggggggaatcaagggtttttgcttcggtttctgctg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42442741 |
attgaaagaggcgttgttgaaacgcagttaattgcgcatgataaagaggtttatgatattgcttggggggaatcaagggtttttgcttcggtttctgctg |
42442642 |
T |
|
| Q |
401 |
atgggtctgttaggatttttgatttaagggataaagagcattcaacaattatctatgaaagtccgcaacctgatacccctttgcttc |
487 |
Q |
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| T |
42442641 |
atgggtctgttaggatttttgatttaagggataaagagcattcaacaattatctatgaaagtccgcaacctgatacccctttgcttc |
42442555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 256 - 476
Target Start/End: Complemental strand, 32738573 - 32738353
Alignment:
| Q |
256 |
cgaattggaacttcaagtattgacactacttgtactatctgggacattgaaagaggcgttgttgaaacgcagttaattgcgcatgataaagaggtttatg |
355 |
Q |
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|||||||| ||||| |||||||| || || |||||||| ||||| ||||| | || ||||| |||||||||||||| ||||||||||||||||||| |
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| T |
32738573 |
cgaattggtacttccagtattgatacaacgtgtactatttgggatattgagaaagaaaccgttgatacgcagttaattgcccatgataaagaggtttatg |
32738474 |
T |
|
| Q |
356 |
atattgcttggggggaatcaagggtttttgcttcggtttctgctgatgggtctgttaggatttttgatttaagggataaagagcattcaacaattatcta |
455 |
Q |
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|||| |||||||| | | |||||||| ||||||||||||||||||||||||||| ||||||||||| | |||||||| ||||| || || || || |
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| T |
32738473 |
atatagcttggggtggtgttggtgtttttgcatcggtttctgctgatgggtctgttagggtttttgatttacgtgataaagaacattctactataattta |
32738374 |
T |
|
| Q |
456 |
tgaaagtccgcaacctgatac |
476 |
Q |
| |
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|||||| | |||||||||| |
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| T |
32738373 |
cgaaagttctgaacctgatac |
32738353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 17047473 - 17047406
Alignment:
| Q |
1 |
accctctcactcaaacctcaaccttcactctccttcgatcacccttacccaccaaccaaactcatgtt |
68 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
17047473 |
accctctcactcaaacctcatccttcactctccttcgatcatccttacccacccaccaaactcatgtt |
17047406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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