View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_high_28 (Length: 469)
Name: NF21097_high_28
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 453; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 4 - 464
Target Start/End: Complemental strand, 35181970 - 35181510
Alignment:
| Q |
4 |
tcagttgagggctgaagcattgtcaataatgaggggacttaaaattcttatattattatttcataagaatttttcaggaagtctcacttttctttctaac |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35181970 |
tcagttgagggctgaagcattgtcaataatgaggggacttaaaattcttatattattatttcataagaatttttcaggaagtctcacttttctttctaac |
35181871 |
T |
|
| Q |
104 |
agcttgcagtatcttctgtggtatggttacccttttgcttctttgccattaaattttgagccgttttgtcttgttgaattgaatatgccttatagcagta |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35181870 |
agcttgcagtatcttctgtggtatggttacccttttgcttctttgccattaaattttgagccgttttgtcttgttgaattgaatatgccttatagcagta |
35181771 |
T |
|
| Q |
204 |
ttcaacgactatgggacggtcacaaggtattttaatgatgtctttcattttctcattttagttaaataataatgatctcaaccattataaaacaaatttg |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35181770 |
ttcaacgactatgggacggtcacaaggtattttaatgatgtctttcattttctcattttagttaaataataatgatctcaaccattataaaacaaatttg |
35181671 |
T |
|
| Q |
304 |
ggactttacacctacataaatgatgatttgcattaaaaaacctactcattaatcatattttggtgttccaagttgtacatatatccctgtcttcccatag |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35181670 |
ggactttacacctacataaatgatgatttgcattaaaaaacctactcattaatcatattttggtgttccaagttgtacatatatccctgtcttcccatag |
35181571 |
T |
|
| Q |
404 |
acacctacattgtgttggtcttcttttcaacacaaggtttgtcaatatttctgtaacctct |
464 |
Q |
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| T |
35181570 |
acacctacattgtgttgatctccttttcaacacaaggtttgtcaatatttctgtaacctct |
35181510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 9 - 256
Target Start/End: Complemental strand, 35176022 - 35175778
Alignment:
| Q |
9 |
tgagggctgaagcattgtcaataatgaggggacttaaaattcttatattattatttcataagaatttttcaggaagtctcacttttctttctaacagctt |
108 |
Q |
| |
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||||||| |||| |||||||||||||||||||||||||||||||||||||| |||| | || ||||||||||||||| ||| ||||||||||||| |
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| T |
35176022 |
tgagggccgaaggattgtcaataatgaggggacttaaaattcttatattata---tcatcaaaaaatttcaggaagtctcaatttcatttctaacagctt |
35175926 |
T |
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| Q |
109 |
gcagtatcttctgtggtatggttacccttttgcttctttgccattaaattttgagccgttttgtcttgttgaattgaatatgccttatagcagtattcaa |
208 |
Q |
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| T |
35175925 |
gcagtatcttctttggtatggttacccttttgcttctttgccattaaattttgagccatttggtcttgttgaattgaatatgccttgtagcagcatccaa |
35175826 |
T |
|
| Q |
209 |
cgactatgggacggtcacaaggtattttaatgatgtctttcattttct |
256 |
Q |
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| T |
35175825 |
cgactatgggacggtcacaaggtattttaatgacttcttttattttct |
35175778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 13 - 276
Target Start/End: Complemental strand, 35052677 - 35052416
Alignment:
| Q |
13 |
ggctgaagcattgtcaataatgaggggacttaaaattcttatattattatttcataagaatttttcaggaagtctcacttttctttctaacagcttgcag |
112 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| || |||||||||||||||||| |
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| T |
35052677 |
ggctgaaggattgtcaataatgaggggacttaaaattcttatattata---tcatacaaatttttcaggaagtctcaacttcctttctaacagcttgcag |
35052581 |
T |
|
| Q |
113 |
tatcttctgtggtatggttacccttttgcttctttgccattaaattttgagccgttttgtcttgttgaattgaatatgccttatagcagtattcaacgac |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||| |||||||||||| |||| || |||||| |
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| T |
35052580 |
tatcttctgtggtatggttacccttttgcttctttgccattaaattttgagccacttcgacttgttgaactgaatatgccttgtagcctcatcaaacgac |
35052481 |
T |
|
| Q |
213 |
tatgggacggtcacaaggtattttaatgatgtctttca-ttttctcattttagttaaataataat |
276 |
Q |
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|||||||||||||||||||| | |||||||||||| || ||||||| |||||||| || |||||| |
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| T |
35052480 |
tatgggacggtcacaaggtactgtaatgatgtcttccatttttctctttttagtttaagaataat |
35052416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 302 - 464
Target Start/End: Complemental strand, 35173642 - 35173475
Alignment:
| Q |
302 |
tgggactttacacctacataaatgatgatttgcattaaaaaa----cctactcattaatcatattttggtgttccaagttgtacatatatccctgtcttc |
397 |
Q |
| |
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||||||| |||| |||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35173642 |
tgggactcaacacatacatagatgatgatttgcattaaaaaaaaaccctactaattaatcatattttggtgttccaagttgtacatatatccctctcttc |
35173543 |
T |
|
| Q |
398 |
ccat-agacacctacattgtgttggtcttcttttcaacacaaggtttgtcaatatttctgtaacctct |
464 |
Q |
| |
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||| |||||||| |||||||||| ||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
35173542 |
tcattagacacctgcattgtgttgatctccttttcaacacaagatttgtcaatatttctgtaacctct |
35173475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 64 - 232
Target Start/End: Complemental strand, 35103417 - 35103249
Alignment:
| Q |
64 |
tcataagaatttttcaggaagtctcacttttctttctaacagcttgcagtatcttctgtggtatggttacccttttgcttctttgccattaaattttgag |
163 |
Q |
| |
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|||||| |||||||| |||| ||| | ||||||||| |||| | ||| |||||| ||||| |||| || |||||| ||||| |||| | |||||||||| |
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| T |
35103417 |
tcataacaatttttctggaaatcttaattttctttccaacaacctgcgatatcttttgtggcatggatatccttttacttctctgccgtcaaattttgag |
35103318 |
T |
|
| Q |
164 |
ccgttttgtcttgttgaattgaatatgccttatagcagtattcaacgactatgggacggtcacaaggta |
232 |
Q |
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|| | || |||||| ||||||||||||||| |||| | ||||||||||| ||||| |||| ||||||| |
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| T |
35103317 |
ccatattatcttgtggaattgaatatgcctcatagtaacattcaacgactgtgggaaggtcgcaaggta |
35103249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 464
Target Start/End: Complemental strand, 35091369 - 35091279
Alignment:
| Q |
375 |
gttgtacatatatccctgtcttcccat-agacacctacattgtgttggtcttcttttcaacacaaggtttgtcaatatttctgtaacctct |
464 |
Q |
| |
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||||| ||| ||||||| |||||| || |||||||||||||| |||| ||| |||||||||||| || |||||||||| |||||||||| |
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| T |
35091369 |
gttgtgcatttatccctctcttccaattagacacctacattgagttgatctctttttcaacacaaaattggtcaatatttatgtaacctct |
35091279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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