View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21097_high_3 (Length: 718)

Name: NF21097_high_3
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21097_high_3
NF21097_high_3
[»] chr7 (3 HSPs)
chr7 (18-391)||(42022513-42022886)
chr7 (461-699)||(42022953-42023191)
chr7 (322-384)||(22620810-22620874)
[»] chr5 (1 HSPs)
chr5 (250-386)||(41364575-41364711)
[»] scaffold0178 (2 HSPs)
scaffold0178 (247-365)||(6090-6208)
scaffold0178 (248-299)||(6710-6761)
[»] chr2 (4 HSPs)
chr2 (248-307)||(44512408-44512467)
chr2 (459-509)||(45134621-45134671)
chr2 (459-517)||(11927124-11927182)
chr2 (248-334)||(36866091-36866177)
[»] scaffold0332 (1 HSPs)
scaffold0332 (459-517)||(12116-12174)
[»] chr6 (1 HSPs)
chr6 (304-377)||(1825865-1825938)
[»] chr4 (2 HSPs)
chr4 (319-377)||(24899322-24899380)
chr4 (322-355)||(14271045-14271078)


Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 391
Target Start/End: Original strand, 42022513 - 42022886
Alignment:
Q  18 gaagataaaaacgatatcaaggtcaatttagaacttggatcctcttatgcttcttgcatcattctccaacaaaaataatgtgagtgagatgagggagaat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42022513 gaagataaaaacgatatcaaggtcaatttagaacttggatcctcttatgcttcttgcatcattctccaacaaaaataatgtgagtgagacgagggagaat 42022612  T
Q  118 aagagggaaaatgaaaagatgattatgaaagagagaatttttaagaggaagttagaggnnnnnnntatatagataaatcgtacgagaggatccaaaccta 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||| ||||||||    
T  42022613 aagagggaaaatgaaaagatgattatgaaagagagaatttttaagaggaagttagagcgaaaaaatatatagataaatcgtacgagaggattcaaaccta 42022712  T
Q  218 atcttttaaaatctcgtaggagaggatctgtgtaatgatctaagataggtccattaggatagtataagtccaagttatattaggtgatgaatcatgctct 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||    
T  42022713 atcttttaaaatctcgtaggagaggatctgtgtaatgatctaagataggtccattagaatagtataagttcaagttatattaggtgatgagtcatgctct 42022812  T
Q  318 ctaaaaggatctagagagatccattgtgatgagtcattagaatatcaaaactataaataagtgattgatcaaat 391  Q
    ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42022813 ctagaaggatctagagagttccattgtgatgagtcattagaatatcaaaactataaataagtgattgatcaaat 42022886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 461 - 699
Target Start/End: Original strand, 42022953 - 42023191
Alignment:
Q  461 tctcttttagaatatcatctctttcatttataaacaacccaaaagttgtccataacaatctgaaccccatctcatagaagtaaaaatatggataacaacc 560  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42022953 tctcttttagaatatcatctctttcatttatgaacaacccaaaagttgtccataacaatctgaaccccatctcatagaagtaaaaatatggataacaacc 42023052  T
Q  561 ggtcccttaacaatagggatgtagagaacattaatagttgataattgaccaactgacagacaatgagccatctcaaaagtttatttttgccctcaattag 660  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42023053 ggtcccttaacaatagggatgtagagaacattaatagttgataattggctaactgacagacaatgagccatctcaaaagtttatttttgccctcaattag 42023152  T
Q  661 catgcttccttgataattgggttgtggaaggttggttgc 699  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42023153 catgcttccttgataattgggttgtggaaggttggttgc 42023191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 322 - 384
Target Start/End: Complemental strand, 22620874 - 22620810
Alignment:
Q  322 aaggatctagagagatccattgtgatgagtcat--tagaatatcaaaactataaataagtgattg 384  Q
    |||||||||||||||| ||||||||||||||||    |||||||||   ||||||||||||||||    
T  22620874 aaggatctagagagattcattgtgatgagtcataggtgaatatcaaggttataaataagtgattg 22620810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 250 - 386
Target Start/End: Original strand, 41364575 - 41364711
Alignment:
Q  250 taatgatctaagataggtccattaggatagtataagtccaagttatattaggtgatgaatcatgctctctaaaaggatctagagagatccattgtgatga 349  Q
    |||||||||| |||||| ||||||| ||||| ||||||||||||||||||| |||||| ||||||||| || ||||||||||||| |||  |||||||||    
T  41364575 taatgatctatgataggcccattagaatagtgtaagtccaagttatattagatgatgagtcatgctctttagaaggatctagagaaatcttttgtgatga 41364674  T
Q  350 gtcattagaatatcaaaactataaataagtgattgat 386  Q
     |||||||||||||||  ||||||| |||||||||||    
T  41364675 atcattagaatatcaaggctataaagaagtgattgat 41364711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 247 - 365
Target Start/End: Original strand, 6090 - 6208
Alignment:
Q  247 gtgtaatgatctaagataggtccattaggatagtataagtccaagttatattaggtgatgaatcatgctctctaaaaggatctagagagatccattgtga 346  Q
    ||||||| |||||||| ||| | ||||| ||||||||||| |||||||||||||||||||| |||| |||||||||| |||||| | |||||| |  |||    
T  6090 gtgtaataatctaagaaaggcctattagaatagtataagttcaagttatattaggtgatgagtcatactctctaaaatgatctaaaaagatccttgatga 6189  T
Q  347 tgagtcattagaatatcaa 365  Q
    |||||||||  ||||||||    
T  6190 tgagtcattgaaatatcaa 6208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 248 - 299
Target Start/End: Complemental strand, 6761 - 6710
Alignment:
Q  248 tgtaatgatctaagataggtccattaggatagtataagtccaagttatatta 299  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  6761 tgtaatgatctaagatagatccattagaatagtataagtccaagttatatta 6710  T

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Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 248 - 307
Target Start/End: Original strand, 44512408 - 44512467
Alignment:
Q  248 tgtaatgatctaagataggtccattaggatagtataagtccaagttatattaggtgatga 307  Q
    |||||||||  |||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  44512408 tgtaatgattcaagataggtccattagaatattataagtccaagttatattaggtgatga 44512467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 459 - 509
Target Start/End: Complemental strand, 45134671 - 45134621
Alignment:
Q  459 tctctcttttagaatatcatctctttcatttataaacaacccaaaagttgt 509  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  45134671 tctctcttttagaatattatctctctcatttataaacaacccaaaagttgt 45134621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 459 - 517
Target Start/End: Original strand, 11927124 - 11927182
Alignment:
Q  459 tctctcttttagaatatcatctctttcatttataaacaacccaaaagttgtccataaca 517  Q
    ||||||||||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||    
T  11927124 tctctcttttagaatattatctctttcatttatgaacaaccaaaaggttttccataaca 11927182  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 248 - 334
Target Start/End: Original strand, 36866091 - 36866177
Alignment:
Q  248 tgtaatgatctaagataggtccattaggatagtataagtccaagttatattaggtgatgaatcatgctctctaaaaggatctagaga 334  Q
    ||||||||||||||||| | || |||| ||  ||||||| |||||||||||||||||| | ||| |||||| | |||||||||||||    
T  36866091 tgtaatgatctaagatatgcccgttagaatgatataagttcaagttatattaggtgatcagtcaggctctcaagaaggatctagaga 36866177  T

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Target: scaffold0332 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 459 - 517
Target Start/End: Original strand, 12116 - 12174
Alignment:
Q  459 tctctcttttagaatatcatctctttcatttataaacaacccaaaagttgtccataaca 517  Q
    ||||||||||||||||| ||||  ||||||||| ||||||| ||||||||| |||||||    
T  12116 tctctcttttagaatattatcttcttcatttatgaacaaccaaaaagttgttcataaca 12174  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 304 - 377
Target Start/End: Original strand, 1825865 - 1825938
Alignment:
Q  304 atgaatcatgctctctaaaaggatctagagagatccattgtgatgagtcattagaatatcaaaactataaataa 377  Q
    |||| ||||||| |||| || ||||||||||||||| |||||||||||||||  ||| ||||  ||||||||||    
T  1825865 atgagtcatgctttctagaatgatctagagagatcctttgtgatgagtcattgaaatgtcaatgctataaataa 1825938  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 319 - 377
Target Start/End: Original strand, 24899322 - 24899380
Alignment:
Q  319 taaaaggatctagagagatccattgtgatgagtcattagaatatcaaaactataaataa 377  Q
    ||||||||||||||||||||  |||||| ||||||||  ||| |||| |||||||||||    
T  24899322 taaaaggatctagagagatcatttgtgacgagtcattgaaatgtcaatactataaataa 24899380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 322 - 355
Target Start/End: Complemental strand, 14271078 - 14271045
Alignment:
Q  322 aaggatctagagagatccattgtgatgagtcatt 355  Q
    ||||||||||||||||||||| ||||||||||||    
T  14271078 aaggatctagagagatccattatgatgagtcatt 14271045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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