View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21097_high_30 (Length: 462)
Name: NF21097_high_30
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_high_30 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 138 - 249
Target Start/End: Original strand, 37001057 - 37001168
Alignment:
| Q |
138 |
atccagataatgaagttaaataaggtaaccaccctcacaaataattaaataagaatatttaaaatgaatgaaagaatctaagaacacttgaattaaataa |
237 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
37001057 |
atccaaataatgaagttaaataaggtaaccaccgtcacaaataattaaataagaatatttaaaatgaatgaaagaatctaagaacactagaattaaataa |
37001156 |
T |
|
| Q |
238 |
aaggtttgtatt |
249 |
Q |
| |
|
|||||||||||| |
|
|
| T |
37001157 |
aaggtttgtatt |
37001168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 314 - 447
Target Start/End: Original strand, 37001356 - 37001494
Alignment:
| Q |
314 |
gttaaattttttgaagaatgactttgcgattttttacagtctgt----tataacttaattattaatatctgcaattgaaccaatc-aaatcaaaacataa |
408 |
Q |
| |
|
|||||||||| |||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
37001356 |
gttaaattttctgaagaatgactttgcaatttattacagtctgtggagtataacttaattattaatatctgcaattgaaccaaaccaaatcaaaacataa |
37001455 |
T |
|
| Q |
409 |
ccataaagtgtgacctccaccgaactctcttctcttctt |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37001456 |
ccataaagtgtgacctccaccgaactctcttctcttctt |
37001494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University