View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_high_32 (Length: 460)
Name: NF21097_high_32
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_high_32 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 35821361 - 35820917
Alignment:
| Q |
1 |
ctagaacttgctccaatttgcactttacaatcatcaatcatagataaactatatattgctgctgctgcattttctcttgcttccattgtttttccgaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35821361 |
ctagaacttgctccaatttgcactttacaatcatcaatcatagataaactatatattgctgctgctgcattttctcttgcttccattgtttttccgaatt |
35821262 |
T |
|
| Q |
101 |
cgagtacttcgactatgttgtcaatcgctccagccgccatgattaaaatcttgttattgtcgtagatcgataggttgaacaatgcagtcacaacatgttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
35821261 |
cgagtacttcgactatgttgtcaatcgctccagccgccatgattaaaatcttgttattgtcgtagatcgataggttgaacaatgcagtcacaacatgctc |
35821162 |
T |
|
| Q |
201 |
ttgaattcttgaatctttagatactaaaagtgttactagaaacggaatagcacctacctcggctatgattcttcggttatccataccggttttcgcgagc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35821161 |
ttgaattcttgaatctttagatactaaaagtgttactagaaacggaatagcacctacctcggctatgattcttcggttatccataccggtttttgcgagc |
35821062 |
T |
|
| Q |
301 |
agacgtatctcgtacgcggattgtctttggatatcggtcgaaccagttgctaattttccaacaagaaattctgctgtcattttgacagcatcttttgatg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35821061 |
agacgtatctcgtacgcggattgtctttggatatcggtcgaaccagttgctaattttccaacaagaaattctgctgtcattttgacagcatcttttgatg |
35820962 |
T |
|
| Q |
401 |
ctttgtttgctgaaatgtgatcaatagcattctcattcttgtgcc |
445 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
35820961 |
ctttgttttctgaaatgtgatcaatagcattctcattcttgtgcc |
35820917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 2 - 369
Target Start/End: Complemental strand, 1023666 - 1023303
Alignment:
| Q |
2 |
tagaacttgctccaatttgcactttacaatcatcaatcatagataaactatatattgctgctgctgcattttctcttgcttccattgtttttccgaattc |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||| |||||| || ||| |||||||||||| || |||| ||| |
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|
| T |
1023666 |
tagaacttgctccaatttgcactttacaatcatttatcatagataatctaaatatttctgctgtaacagtttttcttgcttccatagtcattcctggttc |
1023567 |
T |
|
| Q |
102 |
gagtacttcgactatgttgtcaatcgctccagccgccatgattaaaatcttgttattgtcgtagatcgataggttgaacaatgcagtcacaacatgttct |
201 |
Q |
| |
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|||||||| | |||||||| || |||||||| |||||||| |||||||||||| ||||| ||||| ||||| | | |||| ||||||||| |
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| T |
1023566 |
aagtacttcaaatatgttgtgaaatgctccagctgccatgatcaaaatcttgtta------tagatagatagtttgaaaatacccgtcaaaacatgttcc |
1023473 |
T |
|
| Q |
202 |
tgaattcttgaatc-tttagatactaaaagtgttactagaaacggaatagcacctacctcggcta-tgattcttcggttatccataccggttttcgcgag |
299 |
Q |
| |
|
|| ||||| ||||| ||||||| ||||||| |||| ||||| |||||||| ||||| || |||| ||||||||| || ||||| |||||| | ||||| |
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|
| T |
1023472 |
tggattctcgaatcttttagattttaaaagt-ttaccagaaatggaatagcccctacttctgctattgattcttctattgtccattccggttgttgcgag |
1023374 |
T |
|
| Q |
300 |
-cagacgtatctcgtacgcggattgtctttggatatcggtcgaaccagttgctaattttccaacaagaaat |
369 |
Q |
| |
|
|| || |||||||| || ||||| |||||||| | ||||||||| | |||||||||||||||||| |
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|
| T |
1023373 |
taagccgaatctcgtatgcccattgttgttggatattaattgaaccagttcccaattttccaacaagaaat |
1023303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 1047024 - 1047238
Alignment:
| Q |
2 |
tagaacttgctccaatttgcactttacaatcatcaatcatagataaactatatattgctgctgctgcattttctcttgcttccattgtttttccgaattc |
101 |
Q |
| |
|
|||||||| |||||||||||||||| |||||| | |||||| |||| ||||||||| |||||| ||||| |||||||||||| || ||||| |||| |
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|
| T |
1047024 |
tagaacttactccaatttgcactttgcaatcacctatcatacataagctatatatttctgctgtaacatttgttcttgcttccatagtctttcctgattc |
1047123 |
T |
|
| Q |
102 |
gagtacttcgactatgttgtcaatcgctccagccgccatgattaaaatcttgttattgtcgtagatcgataggttgaacaatgcagtcacaacatgttct |
201 |
Q |
| |
|
|||||||| | ||||||||| | ||| || |||||||| |||||||||||| ||||| ||||| ||||| |||||||||| |||||||| |
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|
| T |
1047124 |
aagtacttcaaatatgttgtcgactgcttttgctgccatgatcaaaatcttgtta------tagatagatagtttgaaaaatgcagtcaaaacatgtttg |
1047217 |
T |
|
| Q |
202 |
tgaattcttgaatctttagat |
222 |
Q |
| |
|
|| |||||||||||||||||| |
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|
| T |
1047218 |
tggattcttgaatctttagat |
1047238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 2 - 369
Target Start/End: Complemental strand, 1010628 - 1010276
Alignment:
| Q |
2 |
tagaacttgctccaatttgcactttacaatcatcaatcatagataaactatatattgctgctgctgcattttctcttgcttccattgtttttccgaattc |
101 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||| |||| ||||||| |||||| ||||||||||||||| || | |||| |
|
|
| T |
1010628 |
tagaacttgctcaaatttgcactttacaatcatctatcata-----------tatttctgctgcaacattttttcttgcttccattgtcatttctgattc |
1010540 |
T |
|
| Q |
102 |
gagtacttcgactatgttgtcaatcgctccagccgccatgattaaaatcttgttattgtcgtagatcgataggttgaacaatgcagtcacaacatgttct |
201 |
Q |
| |
|
|||||||| | |||| ||| || ||||| || |||||| | ||||||||||||| |||| ||||| || || |||||||||| ||||||||| |
|
|
| T |
1010539 |
aagtacttcaaatatgctgttaactgctcctgctgccatggtcaaaatcttgttat------agatagatagtttaaaaaatgcagtcaaaacatgttca |
1010446 |
T |
|
| Q |
202 |
tgaattcttgaatctttagatactaaaagtgttactagaaacggaatagcacctacctcggctat-gattcttcggttatccataccggttttcgcgagc |
300 |
Q |
| |
|
|| |||||||||| | ||||| ||||| ||||| ||||| |||||||| |||||||| ||| | |||||||| |||||||| ||||| | ||||| |
|
|
| T |
1010445 |
tggattcttgaatatatagattttaaaatggttacaagaaatggaatagcccctacctctgcttttgattcttctattatccatttcggttgttgcgagt |
1010346 |
T |
|
| Q |
301 |
a-gacgtatctcgtacgcggattgtctttggatatcggtcgaaccagttgctaattttccaacaagaaat |
369 |
Q |
| |
|
| | || |||||||| || ||||| ||||||||| | ||||||| ||| ||||||||||| |||||| |
|
|
| T |
1010345 |
aagccgaatctcgtatgcccattgttgttggatatcaattgaaccagatgcaaattttccaacgagaaat |
1010276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 2 - 369
Target Start/End: Original strand, 40642256 - 40642618
Alignment:
| Q |
2 |
tagaacttgctccaatttgcactttacaatcatcaatcatagataaactatatattgctgctgctgcattttctcttgcttccattgtttttccgaattc |
101 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||| |||||||| || ||||||||| ||||| | |||||| ||||| || | || ||||| |||| |
|
|
| T |
40642256 |
tagaacttgctccaatttacactttacaataatctatcatagagaatctatatatttctgcttcaacattttttcttgtttatctagtctttcctgattc |
40642355 |
T |
|
| Q |
102 |
gagtacttcgactatgttgtcaatcgctccagccgccatgattaaaatcttgttattgtcgtagatcgataggttgaacaatgcagtcacaacatgttct |
201 |
Q |
| |
|
|||||||| | |||||| |||| |||| | |||||||| ||||| ||||||| |||| ||||| ||||| ||||||||| ||||||||| |
|
|
| T |
40642356 |
aagtacttcaaatatgttatcaactgctctttctgccatgatcaaaatattgttat------agatagatagtttgaaatatgcagtcaaaacatgttcc |
40642449 |
T |
|
| Q |
202 |
tgaattcttgaatctttagatactaaaagtgttactagaaacggaatagcacctacctcggcta-tgattcttcggttatccataccggttttcgcgagc |
300 |
Q |
| |
|
|| |||||||||| ||| ||| ||||| ||||||||||| ||||||| |||||||| |||| |||||||| || ||||| || ||| | ||||| |
|
|
| T |
40642450 |
tggattcttgaatatttcgattttaaaatggttactagaaatagaatagcccctacctctgctattgattcttttattgtccattccagttgttgcgagt |
40642549 |
T |
|
| Q |
301 |
agacgtatctcgtacgcggattgtctttggatatcggtcgaaccagttgctaattttccaacaagaaat |
369 |
Q |
| |
|
| || |||||||| || |||||| ||||||||| || |||||| ||| || |||||||| |||||| |
|
|
| T |
40642550 |
aaccgaatctcgtatgcacattgtcattggatatcagttgaaccatttggcaactttccaacgagaaat |
40642618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 28439427 - 28439383
Alignment:
| Q |
2 |
tagaacttgctccaatttgcactttacaatcatcaatcatagata |
46 |
Q |
| |
|
||||||| |||||||||||||||||||||||| | ||| |||||| |
|
|
| T |
28439427 |
tagaactggctccaatttgcactttacaatcagctatcgtagata |
28439383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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