View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_high_39 (Length: 440)
Name: NF21097_high_39
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_high_39 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 7423455 - 7423033
Alignment:
| Q |
1 |
gggatcagatcccgtctttgcatttatagctgtgataatcctagtttgatcataacttttcccgggtgtaataccagcttgctccagtatagcagttata |
100 |
Q |
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| T |
7423455 |
gggatcagatcccgtctttgcatttatagctgtgataatcctagtttgatcataacttttcccgggtgtaataccagcttgctccagtatagcagttata |
7423356 |
T |
|
| Q |
101 |
ttttctctggcccagagactaactccatgttgaaaataatcaattttttggaatgtggagcaggttccatgtttcctccactcgtgcttccagaattgat |
200 |
Q |
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| T |
7423355 |
ttttctctggcccagagattaactccatgttgaaaataatcaattttttggaatgtggagcaggttccatgtttcctccactcgtgcttccagaattgat |
7423256 |
T |
|
| Q |
201 |
tattattcattgtggtagttacacttggccacagaattgttagcattggtgtcaaaatattaatctgatgaaatgcnnnnnnnnnnnnttatgttcaaga |
300 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
7423255 |
tattattcattgtggtagttacacttggccacggaattgttagcattggtgtcaaaattttaatctgatgaaatgcaaaaataaaaaattatgttcaaga |
7423156 |
T |
|
| Q |
301 |
cttcaagtcatataagatagcaaaagaaaaatgcaaaatattaataagcatacgtc-gcttgatttaacacttcatgcgagcagacagatggttgtgatt |
399 |
Q |
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| T |
7423155 |
cttcaagtcatataagatagcaaaagaaaaatgcaaaatattaataagcatacgtcagcttgatttaacacttcatgcgagcagacagatggttgtgatt |
7423056 |
T |
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| Q |
400 |
ggctcttgttcgagggccataat |
422 |
Q |
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| T |
7423055 |
ggcccttgttcgagggccataat |
7423033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 185
Target Start/End: Complemental strand, 7517244 - 7517071
Alignment:
| Q |
12 |
ccgtctttgcatttatagctgtgataatcctagtttgatcataacttttcccgggtgtaataccagcttgctccagtatagcagttatattttctctggc |
111 |
Q |
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||||||||| ||||||||| |||||| | |||| ||||||||| ||||||| ||||| || ||| ||||||||||| || |||||||||| ||| |
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| T |
7517244 |
ccgtctttgtctttatagctccaataatcaaattttggtcataacttctcccgggcataatagtagtttgttccagtatagctgtgatattttctcaggc |
7517145 |
T |
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| Q |
112 |
ccagagactaactccatgttgaaaataatcaattttttggaatgtggagcaggttccatgtttcctccactcgt |
185 |
Q |
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||| ||| | ||| |||||||||| |||| | |||||||||||| ||||| |||| |||| |||||||||| |
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| T |
7517144 |
ccaaagagtcactgcatgttgaaagtaatatagtttttggaatgtcgagcacgttctgtgttgactccactcgt |
7517071 |
T |
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