View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_high_41 (Length: 426)
Name: NF21097_high_41
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_high_41 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 398
Target Start/End: Original strand, 33315636 - 33316014
Alignment:
| Q |
18 |
ctaactccaaccggtgctggatcaaaagttccttgtccaattcctattggttgtggtccttgcacgttcacatcaaataattgct-ttgtgtttgtgggg |
116 |
Q |
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| T |
33315636 |
ctaactccaataggtgctggatcaaaagttccttgtccaattcctattggttgtggtccttgcacattcacatcaaataattgctcttgtgtttgcgggg |
33315735 |
T |
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| Q |
117 |
cagattgtgacaaatctaaagtaacttgttctccttgaccctcattgttgggaggtggtggtggtggttgaatccaattgggaggcatagacatcacacc |
216 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||| | ||||||||||||||| ||||||| | |
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| T |
33315736 |
aagattgtgacaaatctaaaggaacttgttctccttgaccctcattgttgggaggtg---gtggtggtggaacctaattgggaggcataggcatcacagc |
33315832 |
T |
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| Q |
217 |
ttgattagtgcagccgaacctattgtggttaccttctagaccacaccttgaacatgttatcactggatatgacctccgaacattacctgaaccggaagga |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||| |
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| T |
33315833 |
ttgattagtgcagccgaacctattgtggttaccttctagaccacaccttgaacatgttagcactggatatgacctctgaacattacttgaaccggaagga |
33315932 |
T |
|
| Q |
317 |
ccctcggatgcatctttccttctttgtttctttggccttccaggttgtcttctttttggtgcaggcaccggtttcacataat |
398 |
Q |
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||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33315933 |
ccctcaaatgcatctttccttgtttgtttctttggccttccaggttgtcttctttttggtgcaggcaccggtttcacataat |
33316014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 398
Target Start/End: Complemental strand, 38984304 - 38983929
Alignment:
| Q |
18 |
ctaactccaaccggtgctggatcaaaagttccttgtccaattcctattggttgtggtccttgcacgttcacatcaaataattgct-ttgtgtttgtgggg |
116 |
Q |
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|||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
38984304 |
ctaactccaatcggtgctggatcaaaagttcactgtctaattcctattggttgtggtccttgcacattcacatcaaataattgctcttgtgtttgtgggg |
38984205 |
T |
|
| Q |
117 |
cagattgtgacaaatctaaagtaacttgttctccttgaccctcattgttgggaggtggtggtggtggttgaatccaattgggaggcatagacatcacacc |
216 |
Q |
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|| |||||||||||||||||| ||||| | |||||||| | |||||||| || |||||||||| || ||||| ||||||||||||||||||||| |
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| T |
38984204 |
caaattgtgacaaatctaaagcaacttcatttccttgactcgcattgttgagacgtggtggtggagg------ccaatggggaggcatagacatcacacc |
38984111 |
T |
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| Q |
217 |
ttgattagtgcagccgaacctattgtggttaccttctagaccacaccttgaacatgttatcactggatatgacctccgaacattacctgaaccggaagga |
316 |
Q |
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|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||| | ||||||| ||||| ||||||| |
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| T |
38984110 |
ttgattagtgcagcgaaacctattgtggctaccttctagaccacaccttgaacatgtttgcactggatgtgaccttcagacattacttgaacaggaagga |
38984011 |
T |
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| Q |
317 |
ccctcggatgcatctttccttctttgtttctttggccttccaggttgtcttctttttggtgcaggcaccggtttcacataat |
398 |
Q |
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||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
38984010 |
ccctcatatgcatatttccttctttgtttctttggccttcaaggttgtcttctttttggtgcagtcaccggtttaacataat |
38983929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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