View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21097_high_42 (Length: 411)
Name: NF21097_high_42
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_high_42 |
 | |
|
| [»] scaffold0018 (1 HSPs) |
| | |
|
| [»] scaffold0202 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 13 - 401
Target Start/End: Original strand, 31044990 - 31045378
Alignment:
| Q |
13 |
acaaaccctatggtaagagtacgaaacctactcgttttgcgttcaaaatcaaacctgacatgaactataagcaaagagctcagataaagaccataaacag |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31044990 |
acaaaccctatggtaagagtacgaaacctactcgttttgcgttcaaaatcaaaactgacatgaactataagcaaagagctcagataaagaccataaacag |
31045089 |
T |
|
| Q |
113 |
tctgacatgaatcatcacatgcaaggtatgcagcagtgtatgtaaaggaaaagttgctcttctcctaaagcctcaccaaacgaagcttgcggcagataac |
212 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31045090 |
tctgacatgaatcatctcatgcaaggtattcagcagtgtatgtaaaggaaaagttgctattctcctaaagcctcaccaaacgaagcttgcggcatataac |
31045189 |
T |
|
| Q |
213 |
aagtcttcatcttcacattaaaaacttttagtatatgtaaattaagattcaaaatttaaactcctgcaaacatgttcatataatcctctctttctctgaa |
312 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| || |
|
|
| T |
31045190 |
aagtcttcatcttcacattaaaaactttttgtatatgtaaattaagattcaaaatttaaactcatgcaaacatgttcatataaccctctctttctctaaa |
31045289 |
T |
|
| Q |
313 |
ataccattgaattattagtacatattttatccgtatccaattgtcgcaacatacatttaatttaactctacacttcgacaacttcatct |
401 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
31045290 |
attccattgaattatgagtacatattttatccgtatccaattgtcacaacatacatttaatttaactctagacttctacaacttcatct |
31045378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 150; Significance: 4e-79; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 13 - 388
Target Start/End: Complemental strand, 172400 - 172007
Alignment:
| Q |
13 |
acaaaccctatggtaagagtacgaaacctactcgttttgcgttcaaaatcaaac---ctgacatgaactataagcaaagagctcagataaagaccataaa |
109 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||| ||||||| || |||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
172400 |
acaaatcctaaggtaagagtacgaaacctactcgttttgctctcaaaataaatattactgacatgaattataagcaaatagctcagataaagaccataaa |
172301 |
T |
|
| Q |
110 |
ca--gtctgacatgaatcatcacatgcaa--ggtatgca---gcagtgtatgta-aaggaaaa-gttgctcttctcctaaagcctcaccaaacgaagctt |
200 |
Q |
| |
|
|| || ||||||||||||||||||| || ||| || | | | || | || |||||||| |||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
172300 |
caaagtgtgacatgaatcatcacatgaaacgggtgtgtaaaggaaacgtttctagaaggaaaatgttgctcttctcttaaagccacaccaaacgaagctt |
172201 |
T |
|
| Q |
201 |
gc------ggcagataacaagtcttcatcttcacattaaaaacttttagtatatgtaaattaagattcaaaatttaaactcctgcaaacatgttcatata |
294 |
Q |
| |
|
| | | |||||| ||||||||||||||||||||||| ||| |||||||||||||||| ||||||||| || ||| |||||||||||||||||| |
|
|
| T |
172200 |
gattagaagatatataacaggtcttcatcttcacattaaaaacattttgtatatgtaaattaag-ttcaaaattcaatctcatgcaaacatgttcatata |
172102 |
T |
|
| Q |
295 |
atcctctctttctctgaaataccattgaattattagtacatattttatccgtatccaattgtcgca-acatacatttaatttaactctacacttc |
388 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| || |||| ||||||||| ||||||||||||| |
|
|
| T |
172101 |
atcctctctttctctgaaattccattgaattattagtacatatttcatccgtatccaattgtcacacacattcatttaattaaactctacacttc |
172007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 18339 - 18288
Alignment:
| Q |
14 |
caaaccctatggtaagagtacgaaacctactcgttttgcgttcaaaatcaaa |
65 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18339 |
caaaccctttggttagagtacgaaacctactcgttttgctttcaaaatcaaa |
18288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University