View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_high_43 (Length: 404)
Name: NF21097_high_43
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_high_43 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 24147003 - 24146613
Alignment:
| Q |
1 |
cacagtagagcttgctttagaccccatgcttccgcctcttaagggatcgatttaccgatattttacatcgtttgatcacaaataaacttgctctatcatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
24147003 |
cacagtagagcttgctttagaccccatgcttccgcctcttgggggatcgatttaccgatatttcacatcgtttgagcacaaataaacttgctctatcatc |
24146904 |
T |
|
| Q |
101 |
tcgtacacacatccctgcactaaaagaattgttaccattaaaaatagctgcatctacattacatttcagctcacccatagtcggtgctgcctatctatgc |
200 |
Q |
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||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
24146903 |
tcgcacacacatccctgcactaaaacaattgttaccattaaaaatagctgcatctacattacatttcagctcacccatagtcggtgccgcccatctatgc |
24146804 |
T |
|
| Q |
201 |
attgttaccattgattccatcagccacgcagtaaaccgcgtgcgagctgaacggtgcaagccaattaaaagtttctgttaatagcagttaagtttcctat |
300 |
Q |
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| T |
24146803 |
attgttaccattgattccgtcag-cacgcagt--accgcgtgcgagctgaacggtgcaagccaattaaaattttctgttaatagcagttaagtttcctat |
24146707 |
T |
|
| Q |
301 |
ttactgacc--ttttggccctcttttataacaaaaataagtttcctattttactttacaaactgcatagatctgtactatacctttcgatgatgt |
393 |
Q |
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| T |
24146706 |
ttactgaccttttttggccctcttttataacaaaaataagtttcctatttt-ctttgctaactgcatagatctgtactatacctttctatgatgt |
24146613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 7 - 342
Target Start/End: Complemental strand, 24152439 - 24152102
Alignment:
| Q |
7 |
agagcttgctttagaccccatgcttccgcctcttaagggatcgatttaccgatattttacatcgtttgatcacaaataaacttgc-tctatcatctcgta |
105 |
Q |
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|||||||||||||||||| |||||||||| | | |||| ||| |||||||| ||| | |||||| ||||||||||||||| |||||||||| | | |
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| T |
24152439 |
agagcttgctttagaccctatgcttccgcttactgagggctcggtttaccgacattccatgaggtttgagcacaaataaacttgcctctatcatcttgca |
24152340 |
T |
|
| Q |
106 |
cacacatccctgcactaaaagaattgttaccattaaaaatagctgcatctacattacatttcagctcacccatagtcggtgctgcctatctatgcattgt |
205 |
Q |
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||||||||| |||||| ||| ||||||||||||||||| |||||| ||| ||||||||||| ||||| ||||| |||||| |||| |||||||||||| |
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| T |
24152339 |
cacacatccgtgcacttaaacaattgttaccattaaaagtagctgtatccacattacatttaagctcccccatcatcggtgttgcccatctatgcattgg |
24152240 |
T |
|
| Q |
206 |
taccattgattccatcagccacgcagtaaaccgcgtgcgagctgaacggtgcaagccaattaaaa-gtttctgttaatagcagttaagtttcctatttac |
304 |
Q |
| |
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||||| ||||||| |||||| |||||||||| | || || |||||||||||||||||| |||| ||||| ||||||| | ||||| ||||||||||| |
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| T |
24152239 |
taccactgattccgtcagccctgcagtaaaccacatgtgacctgaacggtgcaagccaaacaaaatttttctattaatagaaattaagattcctatttac |
24152140 |
T |
|
| Q |
305 |
tgaccttttggccctcttttataacaaaaataagtttc |
342 |
Q |
| |
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|| ||||||||||||| ||| ||||||||||||||||| |
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| T |
24152139 |
tggccttttggccctcatttttaacaaaaataagtttc |
24152102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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