View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21097_high_47 (Length: 384)
Name: NF21097_high_47
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_high_47 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 60 - 366
Target Start/End: Complemental strand, 7391606 - 7391300
Alignment:
| Q |
60 |
ctcttttgctaccgaatattatgaacaacaaatggccaaatcatgtacatagcattaaatttggttaatttaatttgcagtcaaatgaagaaaaacatgg |
159 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||| |
|
|
| T |
7391606 |
ctcttttgctacctaatatcatgaacaacaaatggccaaatcatgtacatagcattaaatttggttaatctaatttgtagtcaaatgaagaataacatgg |
7391507 |
T |
|
| Q |
160 |
ttatgtatatcattagacagcattaacattagcaatgctactctttgctacctaacattacgaacaacaaatagccaaatgatataaattgcattaaatt |
259 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7391506 |
ttatgtatatcattagacaacattaacattagcaatgctactctttgctacctaacattacgaacaacaaatagccaaatgatataaattgcattaaatt |
7391407 |
T |
|
| Q |
260 |
taggcaatctaaatagtagtaactgcttcatagagtttgatatttttgcgtacgtgctcaactggtctaataattcgttatcagttagtccatttaaagc |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7391406 |
taggcaatctaaatagtagtaactgcttcatagagtttgatatttttgcgtacgtgctcaactggtctaataattcgttatcagttagtccatttaaagc |
7391307 |
T |
|
| Q |
360 |
atggaaa |
366 |
Q |
| |
|
||||||| |
|
|
| T |
7391306 |
atggaaa |
7391300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University