View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_high_55 (Length: 369)
Name: NF21097_high_55
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_high_55 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 264
Target Start/End: Complemental strand, 2272631 - 2272384
Alignment:
| Q |
17 |
atttattccatactcacaattcccaccaaagaaacaccgcaaagactgcttataccattacactcctgcaatgctcactcccacttctattgaaaatgtc |
116 |
Q |
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| T |
2272631 |
atttattccatactcacaattcccaccaaagaaacaccgcaaagactgcttataccattacactcctgcaatgctcactcccacttctattgaaaatgtc |
2272532 |
T |
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| Q |
117 |
cattcttgtgaggtaattaattttttctaatcatctttacacttgagttcctcaaaagattaattcaatcgtaccctatccaatttctacaaactatttt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2272531 |
cattcttgtgaggtaattaattttttctaatcatctttacacttgagttcctcaaaagattaattcaatcataccctatccaatttctacaaactatttt |
2272432 |
T |
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| Q |
217 |
gtatcatttttctccaaatttgtgtatgtgcaaactgtattacttaac |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272431 |
ctatcatttttctccaaatttgtgtatgtgcaaactgtattacttaac |
2272384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 286 - 362
Target Start/End: Complemental strand, 2272337 - 2272261
Alignment:
| Q |
286 |
atgttaaatagcctaatggctaaaatttcacatttaagaagaataagtaggaattcagagttcaaactccaaccttt |
362 |
Q |
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|||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2272337 |
atgttaaatagcctaatgactagaatttcacatttaagaagaataagtaggaatccagagttcaaactccaaccttt |
2272261 |
T |
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