View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_high_56 (Length: 368)
Name: NF21097_high_56
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_high_56 |
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Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 61750 - 61399
Alignment:
| Q |
1 |
tatctcaacataaaaaattgaacgacttataaaaccaaactaaaaacaacttatgatgatataataattttgtttctccctaaaccaaattaacacttgt |
100 |
Q |
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| T |
61750 |
tatctgaacataaaaaattgaaccacttataaaaccaaactaaaaacaacttatgatgatataataattttgtttcttcctaaaccaaattaacacttgt |
61651 |
T |
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| Q |
101 |
ttttgggtggttggagcattaaggaaggtactacttttgtttgtgtggtcggttattttttgtctgaaattaacattatagaaaattactatacatgcgt |
200 |
Q |
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| T |
61650 |
ttttgggtggttggagcattaaggaaggtactacttttgtttgtgtggtcggttattttttgtctgaaattaacattatagaaaattactatacatgcgt |
61551 |
T |
|
| Q |
201 |
atttttctccaagaatttggtagaaatgaatgaaattagaaagagaaatgattggtgtgtagagaaagaatgaatgggtgatagataaaacttatactgt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
61550 |
atttttctccaagaatttggtagaaatgaatgaaattagaaagagaaatgattggtgtgtagagaaagaatgaatgggtgatagataaaacttattctgt |
61451 |
T |
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| Q |
301 |
ccgtaaatttcgatatccaaaggtcccaatttgttgtcatggttgttataaa |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
61450 |
ccgtaaatttcgatatccaaaggtcccaatttgttgtcatggttgttataaa |
61399 |
T |
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