View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21097_high_64 (Length: 328)
Name: NF21097_high_64
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_high_64 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 44 - 312
Target Start/End: Original strand, 8434652 - 8434903
Alignment:
| Q |
44 |
tacacacatgccaacaagctattaatatattcatcattcactttcatgtgttatggttatcatctatactcacatatcatgggcatggagtctaataact |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
8434652 |
tacacacatgccaacaagctattaatatatgcatcattcactttcatgtgttatggttatctt-----------------gggcatggagtctaataact |
8434734 |
T |
|
| Q |
144 |
ctaatgaagatgatttgaagtctcatgcaaaactgaaaaatctttttgatttgaatgagcttcctgagtcttttgattcacatgaaattgatagtgagag |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8434735 |
ctaatgaagatgatttgaagtctcatgcaaaactgaaaaatctttttgatttgaatgagcttcctgagtcttttgattcatatgaaattgatagtgagag |
8434834 |
T |
|
| Q |
244 |
ttttgagaaatcaattgatgctattgaaaccggtaagaattcacctgatgttgttgagattgttgaaga |
312 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8434835 |
ttttgagaaatcaattgatgctactgaaaccggtaagaattcacctgatgttgttgagattgttgaaga |
8434903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 26 - 188
Target Start/End: Complemental strand, 3817543 - 3817382
Alignment:
| Q |
26 |
gaaaactatttggcggggtacacacatgccaacaagctattaatatattcatcattcactttcatgtgttatggttatcatctatactcacatatcatgg |
125 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||| |||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
3817543 |
gaaaactatttggcggggtacacacaagccaacaa-ctattaatatatgcatcattcactttgatgtgttatggttatcttctgtactcacatatcatgg |
3817445 |
T |
|
| Q |
126 |
gcatggagtctaataactctaatgaagatgatttgaagtctcatgcaaaactgaaaaatcttt |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3817444 |
gcatggagtctaataactctaatgaagatgatttgaagtctcatacaaaactgaaaaatcttt |
3817382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 27 - 162
Target Start/End: Original strand, 27149345 - 27149480
Alignment:
| Q |
27 |
aaaactatttggcggggtacacacatgccaacaagctattaatatattcatcattcactttcatgtgttatggttatcatctatactcacatatcatggg |
126 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
27149345 |
aaaactatttggcggggtacacacaggccaacaagctattaatatatgcatcattcactttcatgtgttatggttatcttctctactcacatatcatggg |
27149444 |
T |
|
| Q |
127 |
catggagtctaataactctaatgaagatgatttgaa |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
27149445 |
catggagtctaataactctaatgaagatgatttgaa |
27149480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 180 - 312
Target Start/End: Complemental strand, 3811524 - 3811392
Alignment:
| Q |
180 |
aaaatctttttgatttgaatgagcttcctgagtcttttgattcacatgaaattgatagtgagagttttgagaaatcaattgatgctattgaaaccggtaa |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
3811524 |
aaaatctttttgatttgaatgagcttcctgagtcttttgattcatatgaaattgatagtgagagttttgagaaatcaattgatgttgctgaaaccggtaa |
3811425 |
T |
|
| Q |
280 |
gaattcacctgatgttgttgagattgttgaaga |
312 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||| |
|
|
| T |
3811424 |
gaattcacttgatgttattgagattgttgaaga |
3811392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 190 - 312
Target Start/End: Original strand, 27149472 - 27149594
Alignment:
| Q |
190 |
tgatttgaatgagcttcctgagtcttttgattcacatgaaattgatagtgagagttttgagaaatcaattgatgctattgaaaccggtaagaattcacct |
289 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||| |
|
|
| T |
27149472 |
tgatttgaatgagcttcctgaatctttgaattcatatgaaattgatagtgagagttttgagaaatcaattgatgctactaaaatcggtaagaattcacct |
27149571 |
T |
|
| Q |
290 |
gatgttgttgagattgttgaaga |
312 |
Q |
| |
|
|||||| |||||||||||||||| |
|
|
| T |
27149572 |
gatgttattgagattgttgaaga |
27149594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University