View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_high_66 (Length: 319)
Name: NF21097_high_66
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_high_66 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 308
Target Start/End: Original strand, 32546902 - 32547197
Alignment:
| Q |
13 |
tcatcaacctcatcatcaatattgtttttgtgactagtcattctattggtgatcaacaatctttgttgcttcaattgaagaacaacctcacattcaactc |
112 |
Q |
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| T |
32546902 |
tcataaacctcatcatcaatattgtttttgtgactagtcattctattggtgatcaacaatctttgttgcttcaattgaagaacaacctcacattcaactc |
32547001 |
T |
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| Q |
113 |
aaccatctcnnnnnnncttgttcattggaatacaagcaaaccttgttgtgaatggaatggagtaacatgcaacaacaaaggatatgttatagctcttgac |
212 |
Q |
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| T |
32547002 |
aaccatctcaaaaaaacttgttcattggaatataagcaaaccttgttgtgaatggaatggagtaacatgcaacaacaaaggacatgttatagctcttgac |
32547101 |
T |
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| Q |
213 |
ttaagtcaagaattcatcaatggacaagttccaattgagatcttccaaataccctcactacaagtgcttgatgtttcttataaccttggtcttcat |
308 |
Q |
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|||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32547102 |
ttaagtcatgaattcatcaatggaaaatttccaattgagatcttccaaataccctcactacaagtgcttgatgtttcttataaccttggtcttcat |
32547197 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 110
Target Start/End: Complemental strand, 3750088 - 3750041
Alignment:
| Q |
63 |
gatcaacaatctttgttgcttcaattgaagaacaacctcacattcaac |
110 |
Q |
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||||||||||| |||||||||||||| || ||||| |||||||||||| |
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| T |
3750088 |
gatcaacaatcattgttgcttcaattaaaaaacaatctcacattcaac |
3750041 |
T |
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