View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21097_high_68 (Length: 316)
Name: NF21097_high_68
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_high_68 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 35 - 303
Target Start/End: Original strand, 26879725 - 26879993
Alignment:
| Q |
35 |
cccttgtaggtgaaatgaaaatttgaggaagtaggtatatgggataaatatcataataaagttgatagccatattgcgatcataaaaaattgactaatct |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26879725 |
cccttgtaggtgaaatgaaaatttgaggaagtaggtatatgggataaatatcataataaagttgatagccatattgcgatcataaaaaattgactaatct |
26879824 |
T |
|
| Q |
135 |
gactgttagtccgtgctgggaacatctcatgatgttcaaattttgggccaatttctgctagctttaattcatcaacaagcaaattttgtggcaataaaga |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26879825 |
gactgttagtccgtgctgggaacatctcataatgttcaaattttgggccaatttctgctagctttaattcatcaacaagcaaattctgtggcaataaaga |
26879924 |
T |
|
| Q |
235 |
tcaaaacaaatatgacatgtagcaaaagcagaaaaaacgcaaagatctagtaagtacgaagataaaact |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26879925 |
tcaaaacaaatatgacatgtagcaaaagcagaaaaaacgcaaagatctagtaagtacgaagataaaact |
26879993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 138 - 270
Target Start/End: Original strand, 40249366 - 40249495
Alignment:
| Q |
138 |
tgttagtccgtgctgggaacatctcatgatgttcaaattttgggccaatttctgctagctttaattcatcaacaagcaaattttgtggcaataaagatca |
237 |
Q |
| |
|
||||||| ||||| ||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||| | |||||| |
|
|
| T |
40249366 |
tgttagttcgtgcagggaacacctcgtgatgttcaaattttgggccaatttctgctagcttcaattcatcaacaagcaaattctgttgcagt--agatca |
40249463 |
T |
|
| Q |
238 |
aaacaaatatgacatgtagcaaaagcagaaaaa |
270 |
Q |
| |
|
||||||||||||||| ||| |||| |||||||| |
|
|
| T |
40249464 |
aaacaaatatgacat-taggaaaatcagaaaaa |
40249495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University