View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_high_71 (Length: 287)
Name: NF21097_high_71
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_high_71 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 2616784 - 2616501
Alignment:
| Q |
1 |
actcggtttttcacattcctcaaccttcgctacaccttcttctacagtttccaaaagaaggaaaaccataatatttttcgtaagcattatatttacaata |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2616784 |
actcggtttttcacattcctcaaccttcactacaccttcttctacagtttccaaaagaaggaaaaccataatatttttcgtaagcattatatttacaata |
2616685 |
T |
|
| Q |
101 |
caataacaaaattcttatattttattattagtagtacacaa----gaaaac-tatatga------aaacaattaattaactatatgaaaacaagaaaact |
189 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| | || | |||| | ||||||||||||||||||||||||||||||||||| |
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| T |
2616684 |
caataacaaaattcttatattttattgttagtagtacacaaatttgcaatcacatattaagttttaaacaattaattaactatatgaaaacaagaaaact |
2616585 |
T |
|
| Q |
190 |
agttacataaatttaagaatttaatttatatacgttataat-----ataaaatattatacattgtcaatcaatcacgattaaca |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2616584 |
agttacataaatttaagaatttaatttatatacgttataatataaaataaaatattatacattgtcaatcaatcacgattaaca |
2616501 |
T |
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