View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21097_high_72 (Length: 283)

Name: NF21097_high_72
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21097_high_72
NF21097_high_72
[»] chr7 (9 HSPs)
chr7 (20-266)||(8541263-8541509)
chr7 (20-98)||(34998528-34998608)
chr7 (130-230)||(24468967-24469067)
chr7 (130-230)||(24473915-24474015)
chr7 (41-89)||(32676804-32676852)
chr7 (20-98)||(39187987-39188065)
chr7 (51-87)||(46023139-46023175)
chr7 (52-102)||(15878797-15878847)
chr7 (22-98)||(30783514-30783588)
[»] chr1 (12 HSPs)
chr1 (20-98)||(21356794-21356872)
chr1 (20-98)||(24241478-24241556)
chr1 (20-98)||(16253029-16253107)
chr1 (20-98)||(41942781-41942859)
chr1 (28-103)||(39744206-39744281)
chr1 (20-98)||(34773448-34773528)
chr1 (20-86)||(38746048-38746115)
chr1 (28-98)||(48503922-48503992)
chr1 (26-98)||(41725488-41725562)
chr1 (58-88)||(2344979-2345009)
chr1 (22-89)||(23238458-23238527)
chr1 (20-98)||(8971427-8971507)
[»] chr3 (11 HSPs)
chr3 (26-98)||(44880254-44880326)
chr3 (20-102)||(1994879-1994961)
chr3 (20-102)||(22831203-22831285)
chr3 (20-103)||(22220205-22220288)
chr3 (20-82)||(39056903-39056965)
chr3 (20-85)||(2008412-2008479)
chr3 (125-198)||(40226999-40227072)
chr3 (51-98)||(47169246-47169293)
chr3 (22-83)||(45805564-45805625)
chr3 (38-98)||(26466378-26466438)
chr3 (46-90)||(39170917-39170961)
[»] chr8 (10 HSPs)
chr8 (20-102)||(42056676-42056758)
chr8 (26-98)||(35179160-35179232)
chr8 (20-102)||(5594780-5594862)
chr8 (20-102)||(39402056-39402140)
chr8 (26-85)||(1162151-1162210)
chr8 (31-98)||(30208199-30208268)
chr8 (20-103)||(40719925-40720010)
chr8 (20-101)||(31333191-31333273)
chr8 (51-98)||(16782448-16782495)
chr8 (28-80)||(42921385-42921437)
[»] chr2 (10 HSPs)
chr2 (20-86)||(38879529-38879595)
chr2 (20-86)||(11028791-11028857)
chr2 (28-87)||(28734108-28734166)
chr2 (20-103)||(37721444-37721527)
chr2 (20-98)||(3870024-3870106)
chr2 (20-98)||(36400857-36400937)
chr2 (20-89)||(30706183-30706250)
chr2 (51-89)||(6512144-6512182)
chr2 (20-88)||(3647428-3647497)
chr2 (54-103)||(9008974-9009023)
[»] chr5 (10 HSPs)
chr5 (20-79)||(23151459-23151518)
chr5 (20-103)||(34849437-34849520)
chr5 (20-98)||(33758794-33758872)
chr5 (20-98)||(2976475-2976551)
chr5 (20-98)||(10719746-10719824)
chr5 (20-78)||(37872231-37872291)
chr5 (61-101)||(37872302-37872342)
chr5 (58-88)||(30319817-30319847)
chr5 (57-98)||(8026467-8026508)
chr5 (20-53)||(42285214-42285247)
[»] scaffold0009 (1 HSPs)
scaffold0009 (20-98)||(25688-25766)
[»] chr6 (3 HSPs)
chr6 (26-98)||(7080153-7080227)
chr6 (20-98)||(2141270-2141348)
chr6 (20-88)||(25336944-25337013)
[»] chr4 (8 HSPs)
chr4 (20-99)||(46550735-46550814)
chr4 (20-102)||(47541838-47541922)
chr4 (20-98)||(17056615-17056694)
chr4 (26-89)||(36364899-36364962)
chr4 (51-103)||(20679904-20679956)
chr4 (22-98)||(39503537-39503615)
chr4 (26-89)||(15827160-15827225)
chr4 (61-98)||(52920160-52920197)
[»] scaffold0095 (1 HSPs)
scaffold0095 (20-102)||(35362-35446)
[»] scaffold0288 (1 HSPs)
scaffold0288 (20-103)||(18085-18168)
[»] scaffold1339 (1 HSPs)
scaffold1339 (52-103)||(119-170)


Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 20 - 266
Target Start/End: Complemental strand, 8541509 - 8541263
Alignment:
Q  20 tgattaaatattttgaggagaatctttttacgtgtgtgtccaaacattattgatttggtcttgtgaccataaaagaatatctcacacatgatcaggacta 119  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8541509 tgattgaatattttgaggagaatctttttacgtgtgtgttcaaacattattgatttggtcttgtgaccataaaagaatatctcacacatgatcaggacta 8541410  T
Q  120 tgcaaatgtttcttctcaaaataattgttaaattggttgaagacctcaactttaatttcattcatcccttccaccctttcttcgttaattgcaatgctta 219  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8541409 tgcaaatgtttcttctcaaactaattgttaatttggttgaagacctcaactttaatttcattcatcctttccaccctttcttcgttaattgcaatgctta 8541310  T
Q  220 agataacattattcctccgtctactcttaaccaaacaacttagaatt 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  8541309 agataacattattcctccgtctactcttaaccaaacaacttagaatt 8541263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 34998608 - 34998528
Alignment:
Q  20 tgattaaatattttgaggagaatctttttac--gtgtgtgtccaaacattattgatttggtcttgtgaccataaaagaata 98  Q
    ||||| ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||  |||||||    
T  34998608 tgattgaatattttgaggagaatctttttatatgtgtgtgtccaaacattattgatttggtcttgtgaccatggaagaata 34998528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 230
Target Start/End: Complemental strand, 24469067 - 24468967
Alignment:
Q  130 tcttctcaaaataattgttaaattggttgaagacctcaactttaatttcattcatcccttccaccctttcttcgttaattgcaatgcttaagataacatt 229  Q
    ||||||||||||  |||||||| ||||||||||||||| ||||||||||||| | || |||||| ||||| | ||| |  | ||| ||||||||||||||    
T  24469067 tcttctcaaaatgtttgttaaaatggttgaagacctcatctttaatttcatttacccattccactctttcgttgttgacagtaattcttaagataacatt 24468968  T
Q  230 a 230  Q
    |    
T  24468967 a 24468967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 230
Target Start/End: Complemental strand, 24474015 - 24473915
Alignment:
Q  130 tcttctcaaaataattgttaaattggttgaagacctcaactttaatttcattcatcccttccaccctttcttcgttaattgcaatgcttaagataacatt 229  Q
    ||||||||||||  |||||||| ||||||||||||||| ||||||||||||| | || |||||| ||||| | ||| |  | ||| ||||||||||||||    
T  24474015 tcttctcaaaatgtttgttaaaatggttgaagacctcatctttaatttcatttacccattccactctttcgttgttgacagtaattcttaagataacatt 24473916  T
Q  230 a 230  Q
    |    
T  24473915 a 24473915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 32676852 - 32676804
Alignment:
Q  41 atctttttacgtgtgtgtccaaacattattgatttggtcttgtgaccat 89  Q
    |||||||||| ||||| |||||||| |||||||||||||||||||||||    
T  32676852 atctttttacatgtgtatccaaacactattgatttggtcttgtgaccat 32676804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 39187987 - 39188065
Alignment:
Q  20 tgattaaatattttgaggagaatctttttacgtgtgtgtccaaacattattgatttggtcttgtgaccataaaagaata 98  Q
    ||||| |||||||| ||||  ||||||||| | ||||||||||| | ||||||||||||||| |||||||  |||||||    
T  39187987 tgattgaatattttaaggaccatctttttatgcgtgtgtccaaatactattgatttggtcttctgaccatggaagaata 39188065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 46023175 - 46023139
Alignment:
Q  51 gtgtgtgtccaaacattattgatttggtcttgtgacc 87  Q
    ||||||||||||||| |||||||||||||||||||||    
T  46023175 gtgtgtgtccaaacaatattgatttggtcttgtgacc 46023139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 15878797 - 15878847
Alignment:
Q  52 tgtgtgtccaaacattattgatttggtcttgtgaccataaaagaatatctc 102  Q
    ||||| |||||||  |||||||||||||||||||| ||| |||||||||||    
T  15878797 tgtgtatccaaacgctattgatttggtcttgtgacaatagaagaatatctc 15878847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 30783514 - 30783588
Alignment:
Q  22 attaaatattttgaggagaatctttttacgtgtgtgtccaaacattattgatttggtcttgtgaccataaaagaata 98  Q
    |||||||||||| || |  |||||||||  |||||||||||||| |||| |||| ||||| |||||||| |||||||    
T  30783514 attaaatattttaagaaccatcttttta--tgtgtgtccaaacactattaatttagtcttctgaccatagaagaata 30783588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 21356872 - 21356794
Alignment:
Q  20 tgattaaatattttgaggagaatctttttacgtgtgtgtccaaacattattgatttggtcttgtgaccataaaagaata 98  Q
    ||||| |||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  21356872 tgattgaatattttgaagagaatctttttatatgtgtgtccaaacattattgatttggtcttgtgaccataaaagaata 21356794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 24241556 - 24241478
Alignment:
Q  20 tgattaaatattttgaggagaatctttttacgtgtgtgtccaaacattattgatttggtcttgtgaccataaaagaata 98  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||  |||||||    
T  24241556 tgattgaatattttgaggagaatctttttatgtgtgtgtccaaacattattgatttggtcatgtgaccatggaagaata 24241478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 16253107 - 16253029
Alignment:
Q  20 tgattaaatattttgaggagaatctttttacgtgtgtgtccaaacattattgatttggtcttgtgaccataaaagaata 98  Q
    ||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||  |||||||    
T  16253107 tgattgaatattttgaggagaatctttttatgtgtgtctccaaacattattgatttggtcttgtgaacatggaagaata 16253029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 41942859 - 41942781
Alignment:
Q  20 tgattaaatattttgaggagaatctttttacgtgtgtgtccaaacattattgatttggtcttgtgaccataaaagaata 98  Q
    ||||| ||||||| || ||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||    
T  41942859 tgattgaatatttcgaagagaatctttttatgtatgtgtccaaacattattgatttggtcttgtgaccatgaaagaata 41942781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 39744206 - 39744281
Alignment:
Q  28 tattttgaggagaatctttttacgtgtgtgtccaaacattattgatttggtcttgtgaccataaaagaatatctca 103  Q
    |||| |||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  39744206 tattctgagaagaatctttttatatgtgtgtccaaacattattgatttggtcttgtgaccatagaagaatacctca 39744281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 34773448 - 34773528
Alignment:
Q  20 tgattaaatattttgaggagaatctttttacgtgtg--tgtccaaacattattgatttggtcttgtgaccataaaagaata 98  Q
    ||||| |||||||||||||||||||||||| |||||  ||| ||||||||||||| |||||||||||| |||  |||||||    
T  34773448 tgattgaatattttgaggagaatctttttatgtgtgtatgtgcaaacattattgagttggtcttgtgatcatggaagaata 34773528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 38746048 - 38746115
Alignment:
Q  20 tgattaaatattttgaggagaatcttttta--cgtgtgtgtccaaacattattgatttggtcttgtgac 86  Q
    ||||| ||||||||||||||||||| ||||   ||||||||||||| ||||||||||||||||||||||    
T  38746048 tgattgaatattttgaggagaatctatttatgggtgtgtgtccaaa-attattgatttggtcttgtgac 38746115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 48503992 - 48503922
Alignment:
Q  28 tattttgaggagaatctttttacgtgtgtgtccaaacattattgatttggtcttgtgaccataaaagaata 98  Q
    |||||||| ||||||| |||||  |||||||||||| ||||||||||||||||| ||| |||  |||||||    
T  48503992 tattttgatgagaatccttttatatgtgtgtccaaatattattgatttggtcttatgaacatggaagaata 48503922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 41725562 - 41725488
Alignment:
Q  26 aatattttgaggagaatctttttacgt--gtgtgtccaaacattattgatttggtcttgtgaccataaaagaata 98  Q
    ||||| ||||||| |||||| ||| ||  ||||||||||| | |||| ||||||||||||||||||| |||||||    
T  41725562 aatatcttgaggacaatcttcttatgtttgtgtgtccaaatactatttatttggtcttgtgaccatagaagaata 41725488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 88
Target Start/End: Complemental strand, 2345009 - 2344979
Alignment:
Q  58 tccaaacattattgatttggtcttgtgacca 88  Q
    |||||||||||||||||||||||||||||||    
T  2345009 tccaaacattattgatttggtcttgtgacca 2344979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 23238458 - 23238527
Alignment:
Q  22 attaaatattttgaggagaatctttttacgtg--tgtgtccaaacattattgatttggtcttgtgaccat 89  Q
    |||||||||||||| || ||| | ||||||||  |||||||||| | |||| ||||||||||||||||||    
T  23238458 attaaatattttgaagataatatatttacgtgagtgtgtccaaagactatttatttggtcttgtgaccat 23238527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 8971507 - 8971427
Alignment:
Q  20 tgattaaatattttgaggagaatctttt--tacgtgtgtgtccaaacattattgatttggtcttgtgaccataaaagaata 98  Q
    ||||||||||||||||||||||| ||||  || ||||||| ||||| | | ||  ||||||| ||||||||| ||||||||    
T  8971507 tgattaaatattttgaggagaatatttttatatgtgtgtgaccaaatactttttctttggtcgtgtgaccatgaaagaata 8971427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 44880326 - 44880254
Alignment:
Q  26 aatattttgaggagaatctttttacgtgtgtgtccaaacattattgatttggtcttgtgaccataaaagaata 98  Q
    |||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||| ||||||||    
T  44880326 aatattttgaggagaatcgttttatgtgtgtgttcaaacattattgatttggtcttgtgaccatgaaagaata 44880254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 1994879 - 1994961
Alignment:
Q  20 tgattaaatattttgaggagaatctttttacgtgtgtgtccaaacattattgatttggtcttgtgaccataaaagaatatctc 102  Q
    ||||| |||||||| ||||||||||||||  |||| |||||||||||||||||||||||||||||||||||  ||||||||||    
T  1994879 tgattgaatattttcaggagaatctttttgtgtgtttgtccaaacattattgatttggtcttgtgaccatagtagaatatctc 1994961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 22831203 - 22831285
Alignment:
Q  20 tgattaaatattttgaggagaatctttttacgtgtgtgtccaaacattattgatttggtcttgtgaccataaaagaatatctc 102  Q
    ||||| ||||||||||| ||||||||| || ||||||||||||| ||||||||||| |||||||||||| | |||||||||||    
T  22831203 tgattgaatattttgagaagaatctttatatgtgtgtgtccaaatattattgatttagtcttgtgaccagagaagaatatctc 22831285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 22220288 - 22220205
Alignment:
Q  20 tgattaaatattttgaggagaatctttttacgtgtgtgtccaaacattattgatttggtcttgtgaccataaaagaatatctca 103  Q
    ||||| ||||||||||| |||||||||||| |||||||| ||||||||||||||||| |||| |||||||  ||||||| ||||    
T  22220288 tgattgaatattttgagaagaatctttttatgtgtgtgtacaaacattattgatttgatcttttgaccatggaagaatacctca 22220205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 39056903 - 39056965
Alignment:
Q  20 tgattaaatattttgaggagaatctttttacgtgtgtgtccaaacattattgatttggtcttg 82  Q
    ||||| ||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||    
T  39056903 tgattgaatattttgaggaaaatctttttatgtgtgtgtccaaacattatagatttggtcttg 39056965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 2008479 - 2008412
Alignment:
Q  20 tgattaaatattttgaggagaatctttttac--gtgtgtgtccaaacattattgatttggtcttgtga 85  Q
    ||||| ||||||||||||||||||||||||   ||||||||||||| |||||||||||||||||||||    
T  2008479 tgattgaatattttgaggagaatctttttatatgtgtgtgtccaaatattattgatttggtcttgtga 2008412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 40227072 - 40226999
Alignment:
Q  125 atgtttcttctcaaaataattgttaaattggttgaagacctcaactttaatttcattcatcccttccacccttt 198  Q
    |||| |||| ||||||| ||| ||||| ||||||||||| ||| ||||||||||||||| ||||||||| ||||    
T  40227072 atgtctcttttcaaaatgatttttaaagtggttgaagacttcacctttaatttcattcaccccttccacacttt 40226999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 47169293 - 47169246
Alignment:
Q  51 gtgtgtgtccaaacattattgatttggtcttgtgaccataaaagaata 98  Q
    ||||||||||||||| ||||||||||||||| |||| |||||||||||    
T  47169293 gtgtgtgtccaaacactattgatttggtcttatgactataaaagaata 47169246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 45805564 - 45805625
Alignment:
Q  22 attaaatattttgaggagaatctttttacgtgtgtgtccaaacattattgatttggtcttgt 83  Q
    |||||||||||| | ||  ||||||||| |||||||| |||||| |||||||||| ||||||    
T  45805564 attaaatattttaaagaccatctttttatgtgtgtgtgcaaacactattgatttgatcttgt 45805625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 26466378 - 26466438
Alignment:
Q  38 agaatctttttacgtgtgtgtccaaacattattgatttggtcttgtgaccataaaagaata 98  Q
    ||||||||||||  | ||||| ||||||||||| ||||| ||||||||||||  |||||||    
T  26466378 agaatctttttatatatgtgttcaaacattattaatttgatcttgtgaccatggaagaata 26466438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 39170961 - 39170917
Alignment:
Q  46 tttacgtgtgtgtccaaacattattgatttggtcttgtgaccata 90  Q
    |||| ||||||| |||||||||||| ||||| |||||||||||||    
T  39170961 tttatgtgtgtgaccaaacattatttatttgatcttgtgaccata 39170917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 42056758 - 42056676
Alignment:
Q  20 tgattaaatattttgaggagaatctttttacgtgtgtgtccaaacattattgatttggtcttgtgaccataaaagaatatctc 102  Q
    ||||| |||||||| | ||||||||||||| || ||||||||||||||||||||||||||||||||||||  |||||||||||    
T  42056758 tgattgaatattttaaagagaatctttttatgtttgtgtccaaacattattgatttggtcttgtgaccatggaagaatatctc 42056676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 35179232 - 35179160
Alignment:
Q  26 aatattttgaggagaatctttttacgtgtgtgtccaaacattattgatttggtcttgtgaccataaaagaata 98  Q
    ||||||||||| ||||||||||||  |||||||||||||||||||||||||||||| ||||||| ||||||||    
T  35179232 aatattttgagaagaatctttttatatgtgtgtccaaacattattgatttggtcttatgaccatgaaagaata 35179160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 5594862 - 5594780
Alignment:
Q  20 tgattaaatattttgaggagaatctttttacgtgtgtgtccaaacattattgatttggtcttgtgaccataaaagaatatctc 102  Q
    ||||| ||||||||||| ||||||||| || ||||||||||||| ||||||||||| |||||||||||| | |||||||||||    
T  5594862 tgattgaatattttgagaagaatctttatatgtgtgtgtccaaatattattgatttagtcttgtgaccagagaagaatatctc 5594780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 39402056 - 39402140
Alignment:
Q  20 tgattaaatattttgaggagaatctttttacgtgtgt--gtccaaacattattgatttggtcttgtgaccataaaagaatatctc 102  Q
    ||||| |||||||||||||||||||||||| || |||  || |||| |||||||||||||||||||||||||  |||||||||||    
T  39402056 tgattgaatattttgaggagaatctttttatgtatgtatgttcaaatattattgatttggtcttgtgaccatggaagaatatctc 39402140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 1162151 - 1162210
Alignment:
Q  26 aatattttgaggagaatctttttacgtgtgtgtccaaacattattgatttggtcttgtga 85  Q
    |||||||||||||||||| ||||| |||||||| |||| |||| ||||||||||||||||    
T  1162151 aatattttgaggagaatccttttatgtgtgtgttcaaatattactgatttggtcttgtga 1162210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 30208268 - 30208199
Alignment:
Q  31 tttgaggagaatctttttacgtgt--gtgtccaaacattattgatttggtcttgtgaccataaaagaata 98  Q
    ||||||||||||||||||| || |  ||||||||||||||||||||||||||| |||||||  |||||||    
T  30208268 tttgaggagaatctttttatgtatatgtgtccaaacattattgatttggtcttatgaccatggaagaata 30208199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 40719925 - 40720010
Alignment:
Q  20 tgattaaatattttgaggagaatcttttta--cgtgtgtgtccaaacattattgatttggtcttgtgaccataaaagaatatctca 103  Q
    ||||| ||||||||||||||||||||||||   |||||||||||||||||||| ||||  |||| |||||||  ||||||| ||||    
T  40719925 tgattgaatattttgaggagaatctttttatgtgtgtgtgtccaaacattattaatttaatcttttgaccatggaagaatacctca 40720010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 31333191 - 31333273
Alignment:
Q  20 tgattaaatattttgaggagaatctttttacgtgtgtgt--ccaaacattattgatttggtcttgtgaccataaaagaatatct 101  Q
    ||||| |||||||| || | |||||||||| ||||||||  ||||||||| |||||||||||||||||| ||  ||||||||||    
T  31333191 tgattgaatattttaagtaaaatctttttatgtgtgtgtaaccaaacatt-ttgatttggtcttgtgactatggaagaatatct 31333273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 98
Target Start/End: Original strand, 16782448 - 16782495
Alignment:
Q  51 gtgtgtgtccaaacattattgatttggtcttgtgaccataaaagaata 98  Q
    |||| |||||||| | |||| |||||||||||||||||||||||||||    
T  16782448 gtgtatgtccaaagactatttatttggtcttgtgaccataaaagaata 16782495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 42921437 - 42921385
Alignment:
Q  28 tattttgaggagaatctttttacgtgtgtgtccaaacattattgatttggtct 80  Q
    ||||||||| ||||||||||||  | ||||| ||||||||||| |||||||||    
T  42921437 tattttgagaagaatctttttatatttgtgttcaaacattattaatttggtct 42921385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 38879595 - 38879529
Alignment:
Q  20 tgattaaatattttgaggagaatctttttacgtgtgtgtccaaacattattgatttggtcttgtgac 86  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  38879595 tgatttaatattttgaggagaatctttttatgtgtgtgtccaaacattattaatttggtcttgtgac 38879529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 11028857 - 11028791
Alignment:
Q  20 tgattaaatattttgaggagaatctttttacgtgtgtgtccaaacattattgatttggtcttgtgac 86  Q
    ||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  11028857 tgattgaatattttaaggagaatctttttatgtgtgtgtccaaacattattgatttggtcttttgac 11028791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 28734108 - 28734166
Alignment:
Q  28 tattttgaggagaatctttttacgtgtgtgtccaaacattattgatttggtcttgtgacc 87  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  28734108 tattttgaggagaat-tttttatgtgtgtgtccaaacattattgatttggtcttgtgacc 28734166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 37721527 - 37721444
Alignment:
Q  20 tgattaaatattttgaggagaatctttttacgtgtgtgtccaaacattattgatttggtcttgtgaccataaaagaatatctca 103  Q
    ||||| |||||||||| ||||||||||||| | | ||||||||| |||||||||||||||||||||||||  ||||||| ||||    
T  37721527 tgattgaatattttgaagagaatctttttatgcgcgtgtccaaatattattgatttggtcttgtgaccatggaagaatacctca 37721444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 3870106 - 3870024
Alignment:
Q  20 tgattaaatattttgaggagaatcttttta----cgtgtgtgtccaaacattattgatttggtcttgtgaccataaaagaata 98  Q
    ||||| ||||||||||||||||||||||||     ||||||||| |||||||||||||||||||||||||||||  |||||||    
T  3870106 tgattgaatattttgaggagaatctttttatgtctgtgtgtgtcaaaacattattgatttggtcttgtgaccatggaagaata 3870024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 36400937 - 36400857
Alignment:
Q  20 tgattaaatattttgaggagaatctttttacgtgtgtgtc--caaacattattgatttggtcttgtgaccataaaagaata 98  Q
    ||||| |||||||||||||||||||||||| ||||||||   ||||||||||||||||||||||| ||||||  |||||||    
T  36400937 tgattgaatattttgaggagaatctttttatgtgtgtgtgttcaaacattattgatttggtcttgagaccatggaagaata 36400857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 30706183 - 30706250
Alignment:
Q  20 tgattaaatattttgaggagaatctttttacgtgtgtgtccaaacattattgatttggtcttgtgaccat 89  Q
    ||||| |||||||| ||||  |||||||||  |||||||||||||| |||||||||||||||||||||||    
T  30706183 tgattgaatattttaaggaccatcttttta--tgtgtgtccaaacactattgatttggtcttgtgaccat 30706250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 89
Target Start/End: Original strand, 6512144 - 6512182
Alignment:
Q  51 gtgtgtgtccaaacattattgatttggtcttgtgaccat 89  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  6512144 gtgtgtgtccaaacactattgatttggtcttgtgaccat 6512182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 3647497 - 3647428
Alignment:
Q  20 tgattaaatattttgaggagaatctttttacgtgt--gtgtccaaacattattgatttggtcttgtgacca 88  Q
    ||||| |||||||| | |||||| |||||| ||||  |||| |||||||||||||||||||||||||||||    
T  3647497 tgattgaatattttaaagagaat-tttttatgtgttcgtgttcaaacattattgatttggtcttgtgacca 3647428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 9009023 - 9008974
Alignment:
Q  54 tgtgtccaaacattattgatttggtcttgtgaccataaaagaatatctca 103  Q
    |||||||||| | |||| |||||||||||||||||| |||||||| ||||    
T  9009023 tgtgtccaaaaactatttatttggtcttgtgaccatgaaagaatagctca 9008974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 23151459 - 23151518
Alignment:
Q  20 tgattaaatattttgaggagaatctttttacgtgtgtgtccaaacattattgatttggtc 79  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23151459 tgattgaatattttgaggagaatctttttatgtgtgtgtccaaacattattgatttggtc 23151518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 34849520 - 34849437
Alignment:
Q  20 tgattaaatattttgaggagaatctttttacgtgtgtgtccaaacattattgatttggtcttgtgaccataaaagaatatctca 103  Q
    ||||| ||||||||||||||||||||||||  |||||||| ||||||||||||||| ||||| ||||||||||| |||| ||||    
T  34849520 tgattgaatattttgaggagaatctttttatatgtgtgtcgaaacattattgatttcgtcttatgaccataaaaaaatacctca 34849437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 33758872 - 33758794
Alignment:
Q  20 tgattaaatattttgaggagaatctttttacgtgtgtgtccaaacattattgatttggtcttgtgaccataaaagaata 98  Q
    ||||| |||| ||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||  |||||||    
T  33758872 tgattgaatagtttgaggagaatctttttatgtgtgtgtccaaacagtattgatttgatcttgtgaccatggaagaata 33758794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 2976475 - 2976551
Alignment:
Q  20 tgattaaatattttgaggagaatctttttacgtgtgtgtccaaacattattgatttggtcttgtgaccataaaagaata 98  Q
    ||||| |||||||| ||||  |||||||||  |||||||||||||| ||||||||||||||| |||||||  |||||||    
T  2976475 tgattgaatattttaaggaccatcttttta--tgtgtgtccaaacactattgatttggtcttatgaccatggaagaata 2976551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 10719824 - 10719746
Alignment:
Q  20 tgattaaatattttgaggagaatctttttacgtgtgtgtccaaacattattgatttggtcttgtgaccataaaagaata 98  Q
    ||||| |||||||| ||||  || |||||| ||||||||||||||| |||| |||||||||| |||||||  |||||||    
T  10719824 tgattgaatattttaaggaccatttttttatgtgtgtgtccaaacactattaatttggtcttatgaccatggaagaata 10719746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 37872231 - 37872291
Alignment:
Q  20 tgattaaatattttgaggagaatcttttta--cgtgtgtgtccaaacattattgatttggt 78  Q
    ||||| |||||||||| |||||||||||||   ||||||||||||| ||||||||||||||    
T  37872231 tgattgaatattttgatgagaatctttttatgtgtgtgtgtccaaatattattgatttggt 37872291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 37872302 - 37872342
Alignment:
Q  61 aaacattattgatttggtcttgtgaccataaaagaatatct 101  Q
    |||||||||||||||||||||||||||||  ||||||||||    
T  37872302 aaacattattgatttggtcttgtgaccatggaagaatatct 37872342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 88
Target Start/End: Complemental strand, 30319847 - 30319817
Alignment:
Q  58 tccaaacattattgatttggtcttgtgacca 88  Q
    |||||||||||||||||||||||||||||||    
T  30319847 tccaaacattattgatttggtcttgtgacca 30319817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 8026508 - 8026467
Alignment:
Q  57 gtccaaacattattgatttggtcttgtgaccataaaagaata 98  Q
    ||||||||| |||||||||||||||||||| ||| |||||||    
T  8026508 gtccaaacagtattgatttggtcttgtgactatagaagaata 8026467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 42285247 - 42285214
Alignment:
Q  20 tgattaaatattttgaggagaatctttttacgtg 53  Q
    ||||| ||||||||||||||||||||||||||||    
T  42285247 tgattgaatattttgaggagaatctttttacgtg 42285214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 25766 - 25688
Alignment:
Q  20 tgattaaatattttgaggagaatctttttacgtgtgtgtccaaacattattgatttggtcttgtgaccataaaagaata 98  Q
    ||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||| |||  |||||||    
T  25766 tgattgaatattttgatgaaaatctttttacgtgtgtgtccaaacattattgatttggtctcgtgatcatggaagaata 25688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 7080227 - 7080153
Alignment:
Q  26 aatattttgaggagaatctttttacgtgtgtgt--ccaaacattattgatttggtcttgtgaccataaaagaata 98  Q
    |||||||||| ||||||||||||| ||||||||  ||||||||||||||||||||| |||||||||| |||||||    
T  7080227 aatattttgaagagaatctttttatgtgtgtgtgtccaaacattattgatttggtcatgtgaccatagaagaata 7080153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 2141270 - 2141348
Alignment:
Q  20 tgattaaatattttgaggagaatctttttacgtgtgtgtccaaacattattgatttggtcttgtgaccataaaagaata 98  Q
    ||||| ||||||||||| | |||||||||| ||| |||||||||| |||||||| || ||||||||||||  |||||||    
T  2141270 tgattgaatattttgagaaaaatctttttatgtgggtgtccaaacgttattgatatgatcttgtgaccatggaagaata 2141348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 25336944 - 25337013
Alignment:
Q  20 tgattaaatattttgaggagaatctttttacgtgtg--tgtccaaacattattgatttggtcttgtgacca 88  Q
    ||||| |||||||| | |||||| |||||| |||||  ||||||||||||||||||||| |||||||||||    
T  25336944 tgattgaatattttaaagagaat-tttttatgtgtgcgtgtccaaacattattgatttgatcttgtgacca 25337013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 46550735 - 46550814
Alignment:
Q  20 tgattaaatattttgaggagaatctttttacgtgtgtgtccaaacattattgatttggtcttgtgaccataaaagaatat 99  Q
    ||||| ||||||| |||||||||||||||| || |||||  |||||||||||||||||||||||||||||  ||||||||    
T  46550735 tgattgaatatttagaggagaatctttttatgtatgtgtttaaacattattgatttggtcttgtgaccatggaagaatat 46550814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 47541838 - 47541922
Alignment:
Q  20 tgattaaatattttgaggagaatctttttacgtgt--gtgtccaaacattattgatttggtcttgtgaccataaaagaatatctc 102  Q
    ||||| ||||||||||||| |||||||||| ||||  ||||||||| |||||||||||| |||||||| ||| ||||||||||||    
T  47541838 tgattgaatattttgaggaaaatctttttatgtgtgtgtgtccaaatattattgatttgatcttgtgatcatgaaagaatatctc 47541922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 17056694 - 17056615
Alignment:
Q  20 tgattaaatattttgaggagaatctttt-tacgtgtgtgtccaaacattattgatttggtcttgtgaccataaaagaata 98  Q
    |||||||||||||| |||| ||| |||| || |||||| | |||||| |||||||||||||||||||||||  |||||||    
T  17056694 tgattaaatattttaaggacaattttttatatgtgtgtattcaaacactattgatttggtcttgtgaccatggaagaata 17056615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 36364899 - 36364962
Alignment:
Q  26 aatattttgaggagaatctttttacgtgtgtgtccaaacattattgatttggtcttgtgaccat 89  Q
    |||||||| ||||  || ||||||  ||||||||||||||||||||||||||||||| ||||||    
T  36364899 aatattttaaggaccatatttttatatgtgtgtccaaacattattgatttggtcttgcgaccat 36364962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 20679904 - 20679956
Alignment:
Q  51 gtgtgtgtccaaacattattgatttggtcttgtgaccataaaagaatatctca 103  Q
    ||||||||||||||| |||||||||| ||||| |||||| |||||||| ||||    
T  20679904 gtgtgtgtccaaacactattgatttgatcttgagaccatgaaagaatacctca 20679956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 39503537 - 39503615
Alignment:
Q  22 attaaatattttgaggagaatctttttacgtgt--gtgtccaaacattattgatttggtcttgtgaccataaaagaata 98  Q
    |||||||||||| | ||  ||||||||| ||||  |||| |||||| ||||||||| |||||||||||||| |||||||    
T  39503537 attaaatattttaaagatcatctttttatgtgtatgtgttcaaacactattgatttagtcttgtgaccatagaagaata 39503615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 15827160 - 15827225
Alignment:
Q  26 aatattttgaggagaatctttttacgtgtgtgtc--caaacattattgatttggtcttgtgaccat 89  Q
    ||||||||||  |||||||||||| ||||||||   |||| |||||||||| ||||||||||||||    
T  15827160 aatattttgacaagaatctttttatgtgtgtgtattcaaatattattgattcggtcttgtgaccat 15827225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 52920160 - 52920197
Alignment:
Q  61 aaacattattgatttggtcttgtgaccataaaagaata 98  Q
    |||||||||||||||||||||||||||||  |||||||    
T  52920160 aaacattattgatttggtcttgtgaccatggaagaata 52920197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 35446 - 35362
Alignment:
Q  20 tgattaaatattttgaggagaatctttttacgtgtgt--gtccaaacattattgatttggtcttgtgaccataaaagaatatctc 102  Q
    ||||| |||||||||||||||||||||||| || |||  || |||| |||||||||||||||||||||||||  |||||||||||    
T  35446 tgattgaatattttgaggagaatctttttatgtatgtatgttcaaatattattgatttggtcttgtgaccatggaagaatatctc 35362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 18085 - 18168
Alignment:
Q  20 tgattaaatattttgaggagaatctttttacgtgtgtgtccaaacattattgatttggtcttgtgaccataaaagaatatctca 103  Q
    ||||| |||||||||||||||||||||||   ||||||| ||||||||||||||| | |||||| |||||  ||||||| ||||    
T  18085 tgattgaatattttgaggagaatctttttctatgtgtgttcaaacattattgattggatcttgtaaccatggaagaatacctca 18168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1339 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1339
Description:

Target: scaffold1339; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 119 - 170
Alignment:
Q  52 tgtgtgtccaaacattattgatttggtcttgtgaccataaaagaatatctca 103  Q
    |||||||||||||| ||||||||||||||||||| |||  ||||||| ||||    
T  119 tgtgtgtccaaacactattgatttggtcttgtgatcatggaagaatacctca 170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University