View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21097_high_75 (Length: 274)
Name: NF21097_high_75
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_high_75 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 35821320 - 35821578
Alignment:
| Q |
1 |
tatgattgatgattgtaaagtgcacaatggagcaagttctagggcaatacctgcattagtaggactattaaaagaaggtacaattataggtaaaagagat |
100 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35821320 |
tatgattgatgattgtaaagtgcaaattggagcaagttctagggcaatacctgcattagtaggactattaaaagaaggtacaattataggtaaaagagat |
35821419 |
T |
|
| Q |
101 |
gctgcaactgcattgtttaatcttgcagtttataatcctaataaattgagtattgttaaaagtggagcagttactttgcttgttgagttgttgatggatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35821420 |
gctgcaactgcattgtttaatcttgcagtttataatcctaataaattgagtattgttaaaagtggagcagttactttgcttgttgagttgttgatggatg |
35821519 |
T |
|
| Q |
201 |
ataaagccggtataaccgacgattcattggcggttcttgccgttcttttaggttgttct |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35821520 |
ataaagccggtataaccgacgattcattggcggttcttgccgttcttttaggttgttct |
35821578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 1047064 - 1046921
Alignment:
| Q |
1 |
tatgattgatgattgtaaagtgcacaatggagcaagttctagggcaatacctgcattagtaggactattaaaagaaggtacaattataggtaaaagagat |
100 |
Q |
| |
|
|||||| | |||||| |||||||| | ||||| |||||||| |||| | |||| |||| || ||||||||||| || || || ||||||| |||| |
|
|
| T |
1047064 |
tatgataggtgattgcaaagtgcaaattggagtaagttctaaggcattgtctgctctagttggcatattaaaagaaagtgcaccaattggtaaaatagat |
1046965 |
T |
|
| Q |
101 |
gctgcaactgcattgtttaatcttgcagtttataatcctaataa |
144 |
Q |
| |
|
||||| |||||||| || ||||||| ||||||||||||||||| |
|
|
| T |
1046964 |
gctgctactgcattattcaatcttgtggtttataatcctaataa |
1046921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 1023634 - 1023707
Alignment:
| Q |
9 |
atgattgtaaagtgcacaatggagcaagttctagggcaatacctgcattagtaggactattaaaagaaggtaca |
82 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| ||||| | | | |||| ||||||||||||||| ||||| |
|
|
| T |
1023634 |
atgattgtaaagtgcaaattggagcaagttctaaagcaatgctttctctagttggactattaaaagaaagtaca |
1023707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 40642296 - 40642167
Alignment:
| Q |
1 |
tatgattgatgattgtaaagtgcacaatggagcaagttctagggcaatacctgcattagtaggactattaaaagaaggtacaattataggtaaaagagat |
100 |
Q |
| |
|
|||||| ||| ||||||||||| | | |||||||||||||| ||||| | ||| |||| ||||||||||||||| ||||| || |||||| |||| |
|
|
| T |
40642296 |
tatgatagattattgtaaagtgtaaattggagcaagttctaaagcaatgcttgctctagttggactattaaaagaatgtacatcgattggtaaaggagaa |
40642197 |
T |
|
| Q |
101 |
gctgcaactgcattgtttaatcttgcagtttat |
133 |
Q |
| |
|
|||| ||||||| || |||||||||| |||| |
|
|
| T |
40642196 |
gctg---ctgcattattcaatcttgcagcttat |
40642167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University