View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_high_78 (Length: 269)
Name: NF21097_high_78
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_high_78 |
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| [»] scaffold0196 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 54 - 253
Target Start/End: Complemental strand, 16344454 - 16344255
Alignment:
| Q |
54 |
cttccactgtactcataatagcaagaaagattggtccaagataatctggaactcagcaattccaccctcaaaatcttttcatgtttggagaatgattcat |
153 |
Q |
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| T |
16344454 |
cttccactgtactcataatagcaagaaagattggtccaagataatctggaactcagcaattccaccctcaaaatcttttcatgtttggagaatgattcat |
16344355 |
T |
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| Q |
154 |
aacaaaatgccaacatatgacaaccttcagcgcaaagggctctctttcccatcaatgtgcagtttatgtggcatgcagtctgaaacctcgcatcatttat |
253 |
Q |
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| T |
16344354 |
aacaaaatgccaacatatgacaaccttcagcgcaaagggctctctttcccatcaatgtgcagtttatgtggcatgcagtctgaaacctcgcatcatttat |
16344255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 91 - 212
Target Start/End: Original strand, 29910 - 30031
Alignment:
| Q |
91 |
aagataatctggaactcagcaattccaccctcaaaatcttttcatgtttggagaatgattcataacaaaatgccaacatatgacaaccttcagcgcaaag |
190 |
Q |
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| T |
29910 |
aagatcatttggaactcaacaattcccccatctaaatcttttcatgtttggagaatgattcacaacaagatgccaactgatgaaaatcttcagctcagag |
30009 |
T |
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| Q |
191 |
ggctctctttcccatcaatgtg |
212 |
Q |
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| T |
30010 |
gtttatctttcccatcaatgtg |
30031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 214
Target Start/End: Complemental strand, 12043445 - 12043322
Alignment:
| Q |
91 |
aagataatctggaactcagcaattccaccctcaaaatcttttcatgtttggagaatgattcataacaaaatgccaacatatgacaaccttcagcgcaaag |
190 |
Q |
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|||||||| ||||||||| |||||| || ||||||||||||||| | ||||||||||| ||| | || || ||||| |||| ||||| || | || || |
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| T |
12043445 |
aagataatatggaactcaacaattcttccatcaaaatcttttcatatgtggagaatgatccatgagaagattccaaccgatgaaaacctgcatctcagag |
12043346 |
T |
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| Q |
191 |
ggctctctttcccatcaatgtgca |
214 |
Q |
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| T |
12043345 |
gcttatctttcccatcaatgtgca |
12043322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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