View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_high_80 (Length: 261)
Name: NF21097_high_80
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_high_80 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 39 - 261
Target Start/End: Complemental strand, 22550767 - 22550545
Alignment:
| Q |
39 |
caagctggtctttcaagtgacataagcacattatcttcaacatctcttccaaatgcccaatatccaataagtgcaactgggaaataacatattgcattta |
138 |
Q |
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| T |
22550767 |
caagctggtctttcaagtgacataagcacattatcttcaacatctcttccaaatgcccaatatccaataagtgcaactgggaaataacatattgcattta |
22550668 |
T |
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| Q |
139 |
tgacataggcaccaatagcacctttccacattggtatttttgatggtttctcaggtgttgatggaattgttgcttgaatttcaagtgctactgcatggcc |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22550667 |
tgacataggcaccaatagcacctttccacattggtatttttgatggtttctcaggtgttgatggaattgttgcttgaatttcaagtgctactgcatggcc |
22550568 |
T |
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| Q |
239 |
agcaaatgcaaatgaaatttgac |
261 |
Q |
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||||||||||||||||||||||| |
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| T |
22550567 |
agcaaatgcaaatgaaatttgac |
22550545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 49 - 261
Target Start/End: Original strand, 41891177 - 41891389
Alignment:
| Q |
49 |
tttcaagtgacataagcacattatcttcaacatctcttccaaatgcccaatatccaataagtgcaactgggaaataacatattgcatttatgacataggc |
148 |
Q |
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||||||||||||| || | |||||| | ||||||| |||||| | |||||||||||| | ||||||||||||||||||||||||||| |||| |||||| |
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| T |
41891177 |
tttcaagtgacattagtatattatcattaacatcttgtccaaaagtccaatatccaatgattgcaactgggaaataacatattgcattgatgaaataggc |
41891276 |
T |
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| Q |
149 |
accaatagcacctttccacattggtatttttgatggtttctcaggtgttgatggaattgttgcttgaatttcaagtgctactgcatggccagcaaatgca |
248 |
Q |
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|| ||||||||| |||||||||| ||| ||||||||||| ||||||||||||||||| || |||||||||||||| | ||||||||||||||||||||| |
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| T |
41891277 |
acaaatagcaccattccacattgctatctttgatggtttttcaggtgttgatggaatcgtagcttgaatttcaagggtcactgcatggccagcaaatgca |
41891376 |
T |
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| Q |
249 |
aatgaaatttgac |
261 |
Q |
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| T |
41891377 |
aatgatatttgac |
41891389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 45 - 261
Target Start/End: Original strand, 41896749 - 41896965
Alignment:
| Q |
45 |
ggtctttcaagtgacataagcacattatcttcaacatctcttccaaatgcccaatatccaataagtgcaactgggaaataacatattgcatttatgacat |
144 |
Q |
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|||||||||||||||||||| | ||||| ||||||||| |||||| ||||||||||| | |||||| |||||||| ||||||||||| || | || |
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| T |
41896749 |
ggtctttcaagtgacataagtatgttatcatcaacatcttgtccaaaagcccaatatcctaaggttgcaacagggaaatagcatattgcattgattaaat |
41896848 |
T |
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| Q |
145 |
aggcaccaatagcacctttccacattggtatttttgatggtttctcaggtgttgatggaattgttgcttgaatttcaagtgctactgcatggccagcaaa |
244 |
Q |
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|||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |||||||| |||| ||||| ||||||| ||| |
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| T |
41896849 |
aggcacaaatagcacctttccacattggtatctttgagggtttctcaggtgttgatggaattgtagcctgaatttctagtgtcactgcttggccagaaaa |
41896948 |
T |
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| Q |
245 |
tgcaaatgaaatttgac |
261 |
Q |
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| T |
41896949 |
tgcaaatgagatttgac |
41896965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 214
Target Start/End: Complemental strand, 8032563 - 8032529
Alignment:
| Q |
180 |
gatggtttctcaggtgttgatggaattgttgcttg |
214 |
Q |
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| T |
8032563 |
gatggtttctcaggtgtagatggaattgttgcttg |
8032529 |
T |
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