View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_high_84 (Length: 253)
Name: NF21097_high_84
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_high_84 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 253
Target Start/End: Original strand, 8783363 - 8783605
Alignment:
| Q |
11 |
cacagaaaaaggattacaagaagcatttactggactggcttttttaggagatgccaccaatctcataactttttgtttcaaaacaattcttgatcctcca |
110 |
Q |
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| T |
8783363 |
cacagaaaaaggattacaagaagcatttactggactggcttttttaggagatgccaccaatctcataactttttgtttcacaacaattcttgatcctcca |
8783462 |
T |
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| Q |
111 |
atgaaactccaatctctgattaagttgattctacttttcacaatgagtttgttacatagctcaagcttagcaccattgattctgatagggaaagaatact |
210 |
Q |
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| T |
8783463 |
atgaaactccaatctctgattaatttgattctacttttcacaatgagtttgttacatagctcaagcttagcaccattgattctgatagggaaagaatact |
8783562 |
T |
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| Q |
211 |
tttgctccttcaaatttgtagtcatccctaaatgatcaatctt |
253 |
Q |
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| T |
8783563 |
tttgctccttcaaatttgtagtcatccctaaatgatcaatctt |
8783605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 11 - 215
Target Start/End: Complemental strand, 7111293 - 7111089
Alignment:
| Q |
11 |
cacagaaaaaggattacaagaagcatttactggactggcttttttaggagatgccaccaatctcataactttttgtttcaaaacaattcttgatcctcca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
7111293 |
cacagaaaaaggattacaagaagcatttactggactggcttttttaggagatgccaccaatctcataattttttgtttcacaacaattcttgatcctcca |
7111194 |
T |
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| Q |
111 |
atgaaactccaatctctgattaagttgattctacttttcacaatgagtttgttacatagctcaagcttagcaccattgattctgatagggaaagaatact |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||| |||||||||||| | |||||| |
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| T |
7111193 |
atgaaactccaatctctgattaagttgattctacttttcacaatgagttttttacatagctcaaacttagcatcattgcttctgatagggagataatact |
7111094 |
T |
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| Q |
211 |
tttgc |
215 |
Q |
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||||| |
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| T |
7111093 |
tttgc |
7111089 |
T |
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