View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21097_high_87 (Length: 252)

Name: NF21097_high_87
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21097_high_87
NF21097_high_87
[»] chr1 (2 HSPs)
chr1 (43-174)||(40501111-40501242)
chr1 (148-236)||(44335028-44335115)
[»] chr8 (8 HSPs)
chr8 (149-238)||(38584188-38584276)
chr8 (155-238)||(8607581-8607663)
chr8 (152-238)||(24431495-24431580)
chr8 (147-238)||(7991176-7991265)
chr8 (151-238)||(27393083-27393169)
chr8 (155-238)||(39810327-39810409)
chr8 (151-221)||(17745282-17745351)
chr8 (179-238)||(21352822-21352880)
[»] chr4 (7 HSPs)
chr4 (147-238)||(2113012-2113102)
chr4 (153-238)||(51392901-51392985)
chr4 (155-235)||(34564782-34564861)
chr4 (151-238)||(33527389-33527477)
chr4 (43-103)||(13182664-13182724)
chr4 (161-238)||(42383474-42383547)
chr4 (149-221)||(19410206-19410277)
[»] chr2 (5 HSPs)
chr2 (147-244)||(39213021-39213117)
chr2 (149-236)||(38902440-38902526)
chr2 (65-153)||(8111927-8112016)
chr2 (149-221)||(31204316-31204387)
chr2 (149-219)||(31184594-31184663)
[»] chr7 (2 HSPs)
chr7 (152-238)||(25037899-25037984)
chr7 (151-238)||(26012827-26012913)
[»] chr3 (3 HSPs)
chr3 (146-238)||(44995568-44995651)
chr3 (48-153)||(14006135-14006238)
chr3 (150-244)||(50034966-50035059)
[»] chr5 (1 HSPs)
chr5 (149-244)||(21368953-21369047)


Alignment Details
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 43 - 174
Target Start/End: Complemental strand, 40501242 - 40501111
Alignment:
Q  43 aaccagattttacatgaatgaaattaatttggagtttaagactgtttttctcaacattttactgcctttccttatcaatcattggatgtatccaatggtt 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||| |||||||    
T  40501242 aaccagattttacatgaatgaaattaatttggagtttaagactgttttactcaacattttactgcctttctctatcaatcattggatgtatctaatggtt 40501143  T
Q  143 tatttcttagaccatgtccaatggtgttgaat 174  Q
    ||||||||||||||| ||||||||||||||||    
T  40501142 tatttcttagaccatatccaatggtgttgaat 40501111  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 44335115 - 44335028
Alignment:
Q  148 cttagaccatgtccaatggtgttgaattgctatgttgaaagcaaccttcaacaagtggaagtgctccaatggtgtgtttgaatgatgat 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||    
T  44335115 cttagaccatgtccaatggtgttgaattgctatgttgaaagcaacattcaacaagtggaagtgctccaatgatgtg-ttgaatgatgat 44335028  T

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Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 38584188 - 38584276
Alignment:
Q  149 ttagaccatgtccaatggtgttgaattgctatgttgaaagcaaccttcaacaagtggaagtgctccaatggtgtgtttgaatgatgatgt 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  38584188 ttagaccatgtccaatggtgttgaattgctatgttgaaagcaaccttcaacaagtggaagtgctccaatggtgtg-ttgaacgatgatgt 38584276  T

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Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 155 - 238
Target Start/End: Original strand, 8607581 - 8607663
Alignment:
Q  155 catgtccaatggtgttgaattgctatgttgaaagcaaccttcaacaagtggaagtgctccaatggtgtgtttgaatgatgatgt 238  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  8607581 catgtccaatggtgttgaattgctatgttgaaagtaactttcaacaagtggaagtgctccaatggtgtg-ttgaatgatgatgt 8607663  T

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Target: chr8; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 24431495 - 24431580
Alignment:
Q  152 gaccatgtccaatggtgttgaattgctatgttgaaagcaaccttcaacaagtggaagtgctccaatggtgtgtttgaatgatgatgt 238  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||    
T  24431495 gaccatgtccaatggtgttgaattgctatattgaaagcaaccttcaacaagtggaagtgctccaatggtat-attgaatgatgatgt 24431580  T

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Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 147 - 238
Target Start/End: Complemental strand, 7991265 - 7991176
Alignment:
Q  147 tcttagaccatgtccaatggtgttgaattgctatgttgaaagcaaccttcaacaagtggaagtgctccaatggtgtgtttgaatgatgatgt 238  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||| |||||||| ||||||||||||||    
T  7991265 tcttagaccatgtccaatggtgttgaattgctatattgaaagcaaccttcaacaaatggaagtgttcc-atggtgtg-ttgaatgatgatgt 7991176  T

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Target: chr8; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 151 - 238
Target Start/End: Complemental strand, 27393169 - 27393083
Alignment:
Q  151 agaccatgtccaatggtgttgaattgctatgttgaaagcaaccttcaacaagtggaagtgctccaatggtgtgtttgaatgatgatgt 238  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||    
T  27393169 agaccatgttcaatagtgttgaattgctatgttgaaagcaaccttcaacatgtggaagtgctccaatgttgtg-ttgaatgatgatgt 27393083  T

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Target: chr8; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 155 - 238
Target Start/End: Original strand, 39810327 - 39810409
Alignment:
Q  155 catgtccaatggtgttgaattgctatgttgaaagcaaccttcaacaagtggaagtgctccaatggtgtgtttgaatgatgatgt 238  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  39810327 catgtctaatggtgttgaattgttatgttgaaagcaaccttcaacaagtggaagtgctctaatggtgtgtttg-atgatgatgt 39810409  T

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Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 151 - 221
Target Start/End: Complemental strand, 17745351 - 17745282
Alignment:
Q  151 agaccatgtccaatggtgttgaattgctatgttgaaagcaaccttcaacaagtggaagtgctccaatggtg 221  Q
    |||||||||||||||||||| ||| | ||||||||||||||| |||||||||| ||| |||||||||||||    
T  17745351 agaccatgtccaatggtgtttaatgggtatgttgaaagcaacattcaacaagt-gaaatgctccaatggtg 17745282  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 21352880 - 21352822
Alignment:
Q  179 atgttgaaagcaaccttcaacaagtggaagtgctccaatggtgtgtttgaatgatgatgt 238  Q
    |||||||||||||||||||| | ||| |||||||||||| ||||  ||||||||||||||    
T  21352880 atgttgaaagcaaccttcaagaggtgaaagtgctccaatagtgt-attgaatgatgatgt 21352822  T

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Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 147 - 238
Target Start/End: Complemental strand, 2113102 - 2113012
Alignment:
Q  147 tcttagaccatgtccaatggtgttgaattgctatgttgaaagcaaccttcaacaagtggaagtgctccaatggtgtgtttgaatgatgatgt 238  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  2113102 tcttagaccatgtccaatggtgttgaattgctatgttaaaagcaaccttcaacaagtgaaagtgctccaatggtgtg-ttgaatgatgatgt 2113012  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 153 - 238
Target Start/End: Complemental strand, 51392985 - 51392901
Alignment:
Q  153 accatgtccaatggtgttgaattgctatgttgaaagcaaccttcaacaagtggaagtgctccaatggtgtgtttgaatgatgatgt 238  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  51392985 accatgtccaatggtgttgaattgctatgttgaaagctaccttcaacaagtggaagtgctccaatggtgtg-ttgaatgatgatgt 51392901  T

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Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 155 - 235
Target Start/End: Complemental strand, 34564861 - 34564782
Alignment:
Q  155 catgtccaatggtgttgaattgctatgttgaaagcaaccttcaacaagtggaagtgctccaatggtgtgtttgaatgatga 235  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  34564861 catgttcaatggtgttgaattgctatgttgaaagcaactttcaacaagtggaagtgctccaatggtgtgttt-aatgatga 34564782  T

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Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 151 - 238
Target Start/End: Complemental strand, 33527477 - 33527389
Alignment:
Q  151 agaccatgtccaatggtgttgaattgctat--gttgaaagcaaccttcaacaagtggaagtgctccaatggtgtgtttgaatgatgatgt 238  Q
    ||||||||| |||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33527477 agaccatgttcaatggcgttgaattgctatatgttgaaagcaaccttcaacaagtggaagtgctccaatggtgtg-ttgaatgatgatgt 33527389  T

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Target: chr4; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 13182664 - 13182724
Alignment:
Q  43 aaccagattttacatgaatgaaattaatttggagtttaagactgtttttctcaacatttta 103  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13182664 aaccagattttacatgaatgaaattaatttggagtttaagactttttttctcaacatttta 13182724  T

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Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 42383474 - 42383547
Alignment:
Q  161 caatggtgttgaattgctatgttgaaagcaaccttcaacaagtggaagtgctccaatggtgtgtttgaatgatgatgt 238  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||||   ||||||| ||||||||||||||    
T  42383474 caatagtgttgaattgctatgttgaaagcaaccttcaataagtggaagtgctc---tggtgtg-ttgaatgatgatgt 42383547  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 19410277 - 19410206
Alignment:
Q  149 ttagaccatgtccaatggtgttgaattgctatgttgaaagcaaccttcaacaagtggaagtgctccaatggtg 221  Q
    |||||||| ||||||||||||  || |||||| ||||||||||| || |||| || ||| |||||||||||||    
T  19410277 ttagaccaagtccaatggtgtgaaaatgctatcttgaaagcaacattaaacatgt-gaaatgctccaatggtg 19410206  T

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Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 147 - 244
Target Start/End: Complemental strand, 39213117 - 39213021
Alignment:
Q  147 tcttagaccatgtccaatggtgttgaattgctatgttgaaagcaaccttcaacaagtggaagtgctccaatggtgtgtttgaatgatgatgttgatga 244  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||| |||||    
T  39213117 tcttagaccatgtccaatggtattgaattgctatgttgaaagcaaccttcaacatgttgaagtgctccaatggtgtg-ttgaatgatgatgtggatga 39213021  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 149 - 236
Target Start/End: Complemental strand, 38902526 - 38902440
Alignment:
Q  149 ttagaccatgtccaatggtgttgaattgctatgttgaaagcaaccttcaacaagtggaagtgctccaatggtgtgtttgaatgatgat 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||    
T  38902526 ttagaccatgtccaatggtgttgaattgctatgttgaaagcaaccttcaacaagtgaaagtgttccaatggtgtg-ttgaatgatgat 38902440  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 153
Target Start/End: Complemental strand, 8112016 - 8111927
Alignment:
Q  65 attaatttggagtttaagactgtttttctc-aacattttactgcctttccttatcaatcattggatgtatccaatggtttatttcttaga 153  Q
    |||||||||||||||||||| |||||| || ||||||||| ||| ||||| |||||| ||||||||||||| |||||||||||| |||||    
T  8112016 attaatttggagtttaagacagtttttttccaacattttattgcatttccctatcaaccattggatgtatctaatggtttatttattaga 8111927  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 31204316 - 31204387
Alignment:
Q  149 ttagaccatgtccaatggtgttgaattgctatgttgaaagcaaccttcaacaagtggaagtgctccaatggtg 221  Q
    |||||||||||||||||||||| ||| | ||||||||||||||| |||||||||| ||| |||||||||||||    
T  31204316 ttagaccatgtccaatggtgtttaatgggtatgttgaaagcaacattcaacaagt-gaaatgctccaatggtg 31204387  T

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Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 219
Target Start/End: Original strand, 31184594 - 31184663
Alignment:
Q  149 ttagaccatgtccaatggtgttgaattgctatgttgaaagcaaccttcaacaagtggaagtgctccaatgg 219  Q
    |||||||||||||||||||||| ||| | ||||||||||||||| |||||||||| ||| |||||||||||    
T  31184594 ttagaccatgtccaatggtgtttaatgggtatgttgaaagcaacattcaacaagt-gaaatgctccaatgg 31184663  T

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Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 25037899 - 25037984
Alignment:
Q  152 gaccatgtccaatggtgttgaattgctatgttgaaagcaaccttcaacaagtggaagtgctccaatggtgtgtttgaatgatgatgt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||    
T  25037899 gaccatgtccaatggtgttgaattgctatgttgaaagcaaccttcaacaagtagaagtgctccaatgatgtg-ttgaatgatgatgt 25037984  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 151 - 238
Target Start/End: Original strand, 26012827 - 26012913
Alignment:
Q  151 agaccatgtccaatggtgttgaattgctatgttgaaagcaaccttcaacaagtggaagtgctccaatggtgtgtttgaatgatgatgt 238  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| || ||||||| ||||||    
T  26012827 agaccatgtccaatggtgttgaattgctatgttcaaagcaaccttcaacaagtggaagggctccaatggtatg-ttgaatgttgatgt 26012913  T

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Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 146 - 238
Target Start/End: Complemental strand, 44995651 - 44995568
Alignment:
Q  146 ttcttagaccatgtccaatggtgttgaattgctatgttgaaagcaaccttcaacaagtggaagtgctccaatggtgtgtttgaatgatgatgt 238  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  44995651 ttcttagaccatgtccaatggtgttga--------gttgaaagcaaccttcaacaagtggaagtgctccaatggtatg-ttgaatgatgatgt 44995568  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 48 - 153
Target Start/End: Complemental strand, 14006238 - 14006135
Alignment:
Q  48 gattttacatgaatgaaattaatttggagtttaagactgtttttctcaacattttactgcctttccttatcaatcattggatgtatccaatggtttattt 147  Q
    ||||||||  ||||| |||| |||||||||||||||||  |||||||||||||||| ||||||||  |||||| |||| |||||||| ||||||||||||    
T  14006238 gattttacgggaatggaattcatttggagtttaagact--ttttctcaacattttattgcctttctctatcaaccatttgatgtatctaatggtttattt 14006141  T
Q  148 cttaga 153  Q
     |||||    
T  14006140 attaga 14006135  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 244
Target Start/End: Complemental strand, 50035059 - 50034966
Alignment:
Q  150 tagaccatgtccaatggtgttgaattgctatgttgaaagcaaccttcaacaagtggaagtgctccaatggtg-tgtttgaatgatgatgttgatga 244  Q
    ||||||||||||||||||||| ||| |  |||||||||||||| |||||||||| ||| ||||||||||||| ||||| ||||||||||| |||||    
T  50035059 tagaccatgtccaatggtgtttaatgggcatgttgaaagcaacgttcaacaagt-gaaatgctccaatggtgatgttt-aatgatgatgtggatga 50034966  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 149 - 244
Target Start/End: Complemental strand, 21369047 - 21368953
Alignment:
Q  149 ttagaccatgtccaatggtgttgaattgctatgttgaaagcaaccttcaacaagtggaagtgctccaatggt-gtgtttgaatgatgatgttgatga 244  Q
    |||||||||||||||||| ||| ||| | ||||||||||||||| |||||||||| ||| |||||||||||| |||||| ||||||||||| |||||    
T  21369047 ttagaccatgtccaatggcgtttaatgggtatgttgaaagcaacattcaacaagt-gaaatgctccaatggtggtgttt-aatgatgatgtggatga 21368953  T

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