View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21097_high_96 (Length: 245)
Name: NF21097_high_96
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_high_96 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 34325599 - 34325387
Alignment:
| Q |
17 |
cttagttgagaacaagaaaaccaactaatgattcactggatttgacaaaccactttttcttgtaaattattctatttgatggtgcttcttcaagaccgag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34325599 |
cttagttgagaacaagaaaaccaactaatgattcactggatttgacaaaccactttttcttgtaaattattctatttgatggtgcttcttcaagaccgag |
34325500 |
T |
|
| Q |
117 |
ttcctcaaccatgcgtgtacttaaatcatagcagactattttttcatcttcttttttgaaaaatatatcaccattcctccctgctccaataagtctctca |
216 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34325499 |
ttcctcaaccatgtgtgtacttaaatcatagcagactattttttcatcttttttttcgaaaaatatatcaccattcctccttgctccaataagtctctca |
34325400 |
T |
|
| Q |
217 |
atatagaagggaa |
229 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
34325399 |
atgtagaagggaa |
34325387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 29352218 - 29352411
Alignment:
| Q |
17 |
cttagttgagaacaagaaaaccaactaatgattcactggatttgacaaaccactttttcttgtaaattattctatttgatggtgcttcttcaagaccgag |
116 |
Q |
| |
|
||||||| ||||||||||||||||||||| | | |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
29352218 |
cttagtttagaacaagaaaaccaactaatctgttattggatttgtcaaaccactctttcttgtaaattattctatttgatggtgcttcttcaagaccaag |
29352317 |
T |
|
| Q |
117 |
ttcct---caaccatgcgtgtacttaaatcatagcagactattttttcatcttcttttttgaaa-aatatatcaccattcctccctgctccaata |
207 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
29352318 |
ttcctcctcaaccatgcgtgtacttaaatcatagcagactatttttttatctt-ttttttgaaagaatatatcaccattcctccctactccaata |
29352411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 27589270 - 27589318
Alignment:
| Q |
160 |
tcatcttcttttttgaaaaatatatcaccattcctccctgctccaataa |
208 |
Q |
| |
|
||||| |||||||| |||||||||||||| ||| |||||||||||||| |
|
|
| T |
27589270 |
tcatcatcttttttaaaaaatatatcacccttctcccctgctccaataa |
27589318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 44918414 - 44918462
Alignment:
| Q |
160 |
tcatcttcttttttgaaaaatatatcaccattcctccctgctccaataa |
208 |
Q |
| |
|
||||||| ||||| |||||||||||||||||| |||||||||| |||| |
|
|
| T |
44918414 |
tcatcttttttttggaaaaatatatcaccatttttccctgctccgataa |
44918462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 4028192 - 4027980
Alignment:
| Q |
17 |
cttagttgagaacaagaaaaccaactaatgattcactggatttgacaaaccactttttcttgtaaattattctatttgatggtgcttcttcaagaccgag |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4028192 |
cttagttgagaacaagaaaaccaactaatgatttactggaattgacaaaccactttttcttgtaaattattctatttgatggtgcttcttcaagaccgag |
4028093 |
T |
|
| Q |
117 |
ttcctcaaccatgcgtgtacttaaatcatagcagactattttttcatcttcttttttgaaaaatatatcaccattcctccctgctccaataagtctctca |
216 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||| | ||| ||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4028092 |
ttcctcaaccatgtgtgtgcttaaatcatagcagactatttttttacctttttttttgaagaatatatcaccattcctccctgctccaataggtctctca |
4027993 |
T |
|
| Q |
217 |
atatagaagggaa |
229 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
4027992 |
atagagaagggaa |
4027980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 30250097 - 30249884
Alignment:
| Q |
17 |
cttagttgagaacaagaaaaccaactaatgattcactggatttgacaaaccactttttcttgtaaattattctatttgatggtgcttcttcaagaccgag |
116 |
Q |
| |
|
||||||||| |||||||||||||||||||| | | ||| || ||||||||||||||||||| |||||||||||||||||| ||||||||||| || |
|
|
| T |
30250097 |
cttagttgaaaacaagaaaaccaactaatgtgtgatccaattcgataaaccactttttcttgtaagttattctatttgatggtggttcttcaagactgat |
30249998 |
T |
|
| Q |
117 |
ttcctcaaccatgcgtgtacttaaatcatagcagactattttttcatc--ttctttttt-gaaaaatatatcaccattcctccctgctccaataagtctc |
213 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||| |||| |||| || |||||| ||| ||||||||||||||| ||||| |||||||| || | |
|
|
| T |
30249997 |
ttcctcaaacatgtgtgtacttaaatcatagcagactaattttccatcgtttattttttcgaagaatatatcaccattcttccctactccaataggttcc |
30249898 |
T |
|
| Q |
214 |
tcaatatagaaggg |
227 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
30249897 |
tcaatataggaggg |
30249884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 25628349 - 25628291
Alignment:
| Q |
149 |
agactattttttcatcttcttttttgaaaaatatatcaccattcctccctgctccaata |
207 |
Q |
| |
|
|||||| |||| ||||| || |||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
25628349 |
agactagttttccatctcctgctttgaagaatatatcaccattactccctgctccaata |
25628291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 30651724 - 30651666
Alignment:
| Q |
149 |
agactattttttcatcttcttttttgaaaaatatatcaccattcctccctgctccaata |
207 |
Q |
| |
|
|||||| |||| ||||| || |||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
30651724 |
agactagttttccatctcctgctttgaagaatatatcaccattactccctgctccaata |
30651666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 31778070 - 31778012
Alignment:
| Q |
149 |
agactattttttcatcttcttttttgaaaaatatatcaccattcctccctgctccaata |
207 |
Q |
| |
|
|||||| |||| ||||| || |||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
31778070 |
agactagttttccatctcctgctttgaagaatatatcaccattactccctgctccaata |
31778012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University