View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_low_10 (Length: 612)
Name: NF21097_low_10
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 531; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 15 - 597
Target Start/End: Original strand, 31074422 - 31075003
Alignment:
| Q |
15 |
aaatagattaaccctatatattcacatctatctatgtgatattattttagcaaaccacactttaggtaatatacaacaatgaacaaaatgtatatccctt |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||| |||| |
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| T |
31074422 |
aaatagattaaccctatatattcacatctatctatgtgatattattttagcaaaccatactttaggtaatatacaacaattaacaaa-tgtatactcctt |
31074520 |
T |
|
| Q |
115 |
aaaacaatatgtcaactaatttgattcacaagaaagatataaataactattagatacaaccattatgagctctcatcatgccatcatctctacctcatca |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31074521 |
aaaacaatatgtcaactaatttgattcacaagaaagataaaaataactattagatacaaccattatgagctctcatcatgccatcatctctacctcatca |
31074620 |
T |
|
| Q |
215 |
ctcttacaaccatcaatttcattacctatagtctgaacactcttataagtatacctctttgctaagaagagataagcacacaaattcaaagcattaataa |
314 |
Q |
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||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31074621 |
ctcttacaaccatcagtttcattacctatcttctgaacactcttataagtatacctctttgctaagaagagataagcacacaaattcaaagcattaataa |
31074720 |
T |
|
| Q |
315 |
ttgccaacatccaataaaacctatccaaacgacttgaatttatatccttcccaatccaacttttaccattcatttctgtcacttgatccacaatagtgat |
414 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31074721 |
ttgccaacatccaataaaacctatccaaacgacttgaatttatatccttcccaatccaacttttaccattcttttctgtcacttgatccacaatagtgat |
31074820 |
T |
|
| Q |
415 |
taaaaaactacttaagaaacttccaactccaatcacactaagatataatgccattcccaaactcctcattgagtcaggaacttgaccatagaaatactct |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
31074821 |
taaaaaactacttaagaaacttccaactccaatcacactaagatataatgccattcccaaactcttcattgagtcaggaacttggccatagaaatactct |
31074920 |
T |
|
| Q |
515 |
tgtaaaccaacaagagaaaatgaatcaccaatgccaagaatcaaatattgaggcactaaccaaaacacactcatagtttcttg |
597 |
Q |
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| T |
31074921 |
tgtaaaccaacaagagaaaatgaatcaccaatgccaagaatcaaatattgaggcactaaccaaaacacactcatagtttcttg |
31075003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 182 - 591
Target Start/End: Original strand, 31063175 - 31063587
Alignment:
| Q |
182 |
agctctcatcatgccatcatctctacc---tcatcactcttacaaccatcaatttcattacctatagtctgaacactcttataagtatacctctttgcta |
278 |
Q |
| |
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|||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31063175 |
agctctcatcatgccatcatgtctaccccatcatcactcttaccggcatcaatttcattacctatcctctgaacactcttataagtatacctctttgcta |
31063274 |
T |
|
| Q |
279 |
agaagagataagcacacaaattcaaagcattaataattgccaacatccaataaaacctatccaaacgacttgaatttatatccttcccaatccaactttt |
378 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31063275 |
agaagagataagcacacaaattcaaagcattgataattgccaacatccaataaaacctatccaaacgacttgaatttatatccttcccaatccaactttt |
31063374 |
T |
|
| Q |
379 |
accattcatttctgtcacttgatccacaatagtgattaaaaaactacttaagaaacttccaactccaatcacactaagatataatgccattcccaaactc |
478 |
Q |
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||||||| |||||||||| ||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
31063375 |
accattcttttctgtcacatgagccacaatagtgattagaaaactgcttaagaaacttccaactccaatcacactaagatataatgccattcctaagctt |
31063474 |
T |
|
| Q |
479 |
ctcattgagtcaggaacttgaccatagaaatactcttgtaaaccaacaagagaaaatgaatcaccaatgccaagaatcaaatattgaggcactaaccaaa |
578 |
Q |
| |
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|||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||| | ||||| |||||||||||||| |||||||||| |
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| T |
31063475 |
ctcattgagtcaggaacttggtcgtagaaatactcttgtaaaccaacaagggaaaatgaatcaccgaaaccaaggatcaaatattgagggactaaccaaa |
31063574 |
T |
|
| Q |
579 |
acacactcatagt |
591 |
Q |
| |
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| ||||||||||| |
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| T |
31063575 |
agacactcatagt |
31063587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 255 - 525
Target Start/End: Original strand, 31057169 - 31057439
Alignment:
| Q |
255 |
tcttataagtatacctctttgctaagaagagataagcacacaaattcaaagcattaataattgccaacatccaataaaacctatccaaacgacttgaatt |
354 |
Q |
| |
|
||||||||||||||||||||| || || |||| | | |||| |||||||| | ||||| |||||||||||||||||| ||||||||||||| ||||| |
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| T |
31057169 |
tcttataagtatacctctttgatatgacgagaaacacgcacacattcaaagaactaatagctgccaacatccaataaaagttatccaaacgactcgaatt |
31057268 |
T |
|
| Q |
355 |
tatatccttcccaatccaacttttaccattcatttctgtcacttgatccacaatagtgattaaaaaactacttaagaaacttccaactccaatcacacta |
454 |
Q |
| |
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|||||||||||||||||||||||| ||| || || | || || || || |||| ||||| ||| | |||||||| |||||| ||||| ||||||| |
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| T |
31057269 |
tatatccttcccaatccaacttttgccactctttgccgtgacatggtcgacaacgacgattataaagttgcttaagaagtttccaattccaaacacacta |
31057368 |
T |
|
| Q |
455 |
agatataatgccattcccaaactcctcattgagtcaggaacttgaccatagaaatactcttgtaaaccaac |
525 |
Q |
| |
|
| ||| || |||| |||||| || |||||||| |||||||||| | |||||||||||||||| |||||| |
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|
| T |
31057369 |
aaatacaaggccaatcccaagcttctcattgaatcaggaacttcgtcgtagaaatactcttgtataccaac |
31057439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 391 - 528
Target Start/End: Original strand, 6145631 - 6145768
Alignment:
| Q |
391 |
tgtcacttgatccacaatagtgattaaaaaactacttaagaaacttccaactccaatcacactaagatataatgccattcccaaactcctcattgagtca |
490 |
Q |
| |
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|||||| ||||| ||||| || || || |||||||||| ||| || || |||||||||||||||| || | | | |||||||| || |||||||| ||| |
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|
| T |
6145631 |
tgtcacatgatcaacaattgttatcaacaaactacttagaaaatttgcagctccaatcacactaaggtaaagtccaattcccaagcttctcattgaatca |
6145730 |
T |
|
| Q |
491 |
ggaacttgaccatagaaatactcttgtaaaccaacaag |
528 |
Q |
| |
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||||||||| |||||||||| ||||||||||||||||| |
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|
| T |
6145731 |
ggaacttgatcatagaaatattcttgtaaaccaacaag |
6145768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 441 - 545
Target Start/End: Original strand, 23692504 - 23692608
Alignment:
| Q |
441 |
ctccaatcacactaagatataatgccattcccaaactcctcattgagtcaggaacttgaccatagaaatactcttgtaaaccaacaagagaaaatgaatc |
540 |
Q |
| |
|
||||||||||||| | ||| || || || || || || |||||||| ||||||||||| |||||||||| |||||||| || ||||| | |||| ||| |
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|
| T |
23692504 |
ctccaatcacacttaaataaaaagctatacctaagcttctcattgaatcaggaacttggtcatagaaatattcttgtaatcccacaagggtaaatccatc |
23692603 |
T |
|
| Q |
541 |
accaa |
545 |
Q |
| |
|
||||| |
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|
| T |
23692604 |
accaa |
23692608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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