View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_low_102 (Length: 240)
Name: NF21097_low_102
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_102 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 34826090 - 34826316
Alignment:
| Q |
1 |
accactcacctaaactcatcttctccaaatcaagcatattcccatcccaattatatttctccttttcttcagcttcatcacagttctctttaccatcacc |
100 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34826090 |
accactcacctaaactcatcttctccaaatcaggcatattcccatcccaattatatttctccttttcttcagcttcatcacagttctctttaccatcacc |
34826189 |
T |
|
| Q |
101 |
aacaatctcttcctctaacttgttcnnnnnnntctcttcctctaatttcttcttttctttacgaccactacccttcattttctctttcacaacattctcc |
200 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
34826190 |
aacaatctcttcctctaacttgttcaaaaaaatatcttcctctaatttcttctttcctttgcgaccaccacccttcattttctctttcacaacattctcc |
34826289 |
T |
|
| Q |
201 |
aaaccatctactatcaagcatgaactt |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
34826290 |
aaaccatctactatcaagcatgaactt |
34826316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 97
Target Start/End: Original strand, 34823321 - 34823363
Alignment:
| Q |
55 |
atttctccttttcttcagcttcatcacagttctctttaccatc |
97 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||| |
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|
| T |
34823321 |
atttctccttttcttcagcatcatcacaattctctttaccatc |
34823363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 34823021 - 34823089
Alignment:
| Q |
1 |
accactcacctaaactcatcttctccaaatcaagcatattcccatcccaattatatttctccttttctt |
69 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| || |||| |||||| ||| | ||||||||||||| |
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| T |
34823021 |
accactcacctaaattcatcttctccaaatcaggccaattctcatccccattcaaattctccttttctt |
34823089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 97
Target Start/End: Original strand, 28945958 - 28946000
Alignment:
| Q |
55 |
atttctccttttcttcagcttcatcacagttctctttaccatc |
97 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||| |
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|
| T |
28945958 |
atttctccttttcttcagcatcatcacaattctctttaccatc |
28946000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 28945658 - 28945726
Alignment:
| Q |
1 |
accactcacctaaactcatcttctccaaatcaagcatattcccatcccaattatatttctccttttctt |
69 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| || |||| |||||| ||| | ||||||||||||| |
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|
| T |
28945658 |
accactcacctaaattcatcttctccaaatcaggccaattctcatccccattcaaattctccttttctt |
28945726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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