View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_low_105 (Length: 238)
Name: NF21097_low_105
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_105 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 10506380 - 10506160
Alignment:
| Q |
18 |
ttcagcacatactgattgtgaaatatttggagcgtcttctgattttactatgtcactatagtagccaaataatcgcaaattttgcttagtaatatcaaga |
117 |
Q |
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| T |
10506380 |
ttcagcacatactgattgtgaaatatttggagtgtcttccgattttactatgtcactatagtagccaaataatcgcaaattttgcttagtaatatcaaga |
10506281 |
T |
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| Q |
118 |
accggttcattttttgttgatgattcgaaaggtgtgcgaatcggagaccacacggtactagaatcatttttggtcgatgattcgaaagacatgcgaatcg |
217 |
Q |
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| T |
10506280 |
actggttcattttttgttgatgattcgaaaggcgtgcgaatcggagaccacacgggactagaatcctttttggtcgatgattcgaaagacatgcgaatcg |
10506181 |
T |
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| Q |
218 |
gagaccacacgggactataat |
238 |
Q |
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| T |
10506180 |
gagaccacacgggactataat |
10506160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 10506214 - 10506113
Alignment:
| Q |
127 |
ttttttgttgatgattcgaaaggtgtgcgaatcggagaccacacggtactagaatcatttttggtcgatgattcgaaagacatgcgaatcggagaccaca |
226 |
Q |
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| T |
10506214 |
tttttggtcgatgattcgaaagacatgcgaatcggagaccacacgggactataatcattttttctcgaagattctaaaggcgtgcgaatcggagaccaca |
10506115 |
T |
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| Q |
227 |
cg |
228 |
Q |
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|| |
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| T |
10506114 |
cg |
10506113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 42303557 - 42303505
Alignment:
| Q |
98 |
tttgcttagtaatatcaagaaccggttcattttttgttgatgattcgaaaggt |
150 |
Q |
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| T |
42303557 |
tttgcttagtaatatcaagaccttgatcactttttgttgatgattctaaaggt |
42303505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 24405048 - 24405008
Alignment:
| Q |
41 |
tatttggagcgtcttctgattttactatgtcactatagtag |
81 |
Q |
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| T |
24405048 |
tatttggagtgtcttctgatttgactaagtcactatagtag |
24405008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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