View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21097_low_107 (Length: 236)
Name: NF21097_low_107
Description: NF21097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21097_low_107 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 20146994 - 20147190
Alignment:
| Q |
1 |
aataagaagttgaaa-cgaaaccatataggagagaaaaattgaggcaataattgaacctaaagattgattgaaagttgactgtccaataagggataaata |
99 |
Q |
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| T |
20146994 |
aataagaagttgaaaacgaaatcatataggagagaaaaattgaggcagtaattgaacctaaagattgattgaaagttgatagtccaagaagggataaata |
20147093 |
T |
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| Q |
100 |
tatttgatcttgaatgattattgaacgatgatagttttaaattaatctcaagaaaatggtggtagtggtttgaattgtgaaactttttataagaaaa |
196 |
Q |
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| T |
20147094 |
tatttgatcttgactgattgttgaacgatgattgttttaaattaatctcaagaaaatggtggtagtggtttgaacagtgaaactttttataagaaaa |
20147190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 25100669 - 25100866
Alignment:
| Q |
1 |
aataagaagttgaaa-cgaaaccatataggagagaaaaattgaggcaataattgaacctaaagattgattgaaagttgactgtccaataagggataaata |
99 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
25100669 |
aataagaagttgaaaacgaaaccatataggagagaaaaattgaggcagtaattgaacctaaagattgattgaaagttgaaagtccaagaagggataaata |
25100768 |
T |
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| Q |
100 |
tatttgatcttgaat-gattattgaacgatgatagttttaaattaatctcaagaaaatggtggtagtggtttgaattgtgaaactttttataagaaaa |
196 |
Q |
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||||||||||||| | | || |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25100769 |
tatttgatcttgactggtttgttgaacgatgattgttttaaattaatctcaagaaaatggtggtagtggtttgaactgtgaaactttttataagaaaa |
25100866 |
T |
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